Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.47□□□□□ -0.09
COL9A1P20849 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
COL9A1P20849 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.09
COL9A1P20849 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.46□□□□□ -0.09
COL9A1P20849 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 LINC00570-201ENST00000417473 1330 ntTSL 2 BASIC14.46□□□□□ -0.09
COL9A1P20849 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.09
COL9A1P20849 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.46□□□□□ -0.09
COL9A1P20849 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.46□□□□□ -0.09
COL9A1P20849 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.46□□□□□ -0.09
COL9A1P20849 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 TRIQK-219ENST00000523580 1630 ntTSL 2 BASIC14.46□□□□□ -0.09
COL9A1P20849 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 TTC32-201ENST00000333610 822 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC14.46□□□□□ -0.09
COL9A1P20849 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 OR7E115P-201ENST00000382617 1024 ntBASIC14.46□□□□□ -0.09
COL9A1P20849 METTL5-203ENST00000392640 800 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 CHCHD2P6-201ENST00000454346 447 ntBASIC14.46□□□□□ -0.09
COL9A1P20849 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.46□□□□□ -0.09
COL9A1P20849 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
COL9A1P20849 JPT1-205ENST00000470924 663 ntTSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 IGHV1-12-201ENST00000518307 205 ntBASIC14.46□□□□□ -0.09
COL9A1P20849 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC14.46□□□□□ -0.09
COL9A1P20849 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 CNIH1-203ENST00000553660 785 ntTSL 2 BASIC14.46□□□□□ -0.09
COL9A1P20849 SORD2P-201ENST00000558556 1069 ntBASIC14.46□□□□□ -0.09
COL9A1P20849 AC140658.4-201ENST00000561990 352 ntBASIC14.46□□□□□ -0.09
COL9A1P20849 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC14.46□□□□□ -0.09
COL9A1P20849 SNRPN-208ENST00000577565 1298 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 AC018695.4-201ENST00000602706 689 ntTSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 AC092574.1-201ENST00000609771 420 ntBASIC14.46□□□□□ -0.09
COL9A1P20849 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC14.46□□□□□ -0.09
COL9A1P20849 MECP2-226ENST00000640414 897 ntTSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL9A1P20849 AC008033.3-201ENST00000612531 1407 ntBASIC14.46□□□□□ -0.09
COL9A1P20849 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
COL9A1P20849 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
COL9A1P20849 AGGF1P1-201ENST00000509500 2073 ntBASIC14.46□□□□□ -0.09
COL9A1P20849 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
COL9A1P20849 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC14.46□□□□□ -0.1
COL9A1P20849 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL9A1P20849 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.1
COL9A1P20849 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.46□□□□□ -0.1
COL9A1P20849 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL9A1P20849 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.46□□□□□ -0.1
COL9A1P20849 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.46□□□□□ -0.1
COL9A1P20849 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
COL9A1P20849 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL9A1P20849 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL9A1P20849 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL9A1P20849 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.46□□□□□ -0.1
COL9A1P20849 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.1
COL9A1P20849 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL9A1P20849 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
COL9A1P20849 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
COL9A1P20849 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
COL9A1P20849 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 AC023157.3-201ENST00000619086 2088 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
COL9A1P20849 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 MGST1-204ENST00000396209 979 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms