Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 WDR54-202ENST00000409791 854 ntTSL 3 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 AC105443.1-201ENST00000433754 712 ntBASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 GYG1-209ENST00000483267 801 ntTSL 2 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 ALDOAP1-201ENST00000491506 1078 ntBASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 AC091807.1-201ENST00000418838 1544 ntBASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 PI4KAP2-201ENST00000360806 2080 ntBASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SHANK3Q9BYB0 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 MARCKSL1P2-201ENST00000401037 976 ntBASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 HNRNPABP1-201ENST00000406003 734 ntBASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 RBMX2P5-201ENST00000424312 969 ntBASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 AP000346.2-202ENST00000425948 383 ntBASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 AC092865.2-201ENST00000439409 971 ntBASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 GMFG-206ENST00000597595 758 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 AC011239.2-201ENST00000624820 1489 ntBASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 KRT8P24-201ENST00000560290 1559 ntBASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHANK3Q9BYB0 KLK8-203ENST00000347619 555 ntTSL 2 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 RN7SL672P-201ENST00000474091 317 ntBASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 RPL10P8-201ENST00000522888 313 ntBASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 HPGD-204ENST00000504433 1910 ntTSL 2 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 PIGB-202ENST00000539642 1668 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
SHANK3Q9BYB0 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 AC026271.1-201ENST00000447794 1348 ntBASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 AC007336.3-201ENST00000623886 2160 ntBASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 ASS1P1-201ENST00000402854 1237 ntBASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 AC104759.1-201ENST00000559109 939 ntBASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC17.52■□□□□ 0.39
SHANK3Q9BYB0 AC025048.4-201ENST00000589740 699 ntTSL 3 BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms