Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CAMSAP2-202ENST00000358823 7352 ntAPPRIS P3 TSL 5 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 CHTF8-201ENST00000306585 2561 ntBASIC8.71□□□□□ -1.02
LINC00643Q86TS7 CDKL2-201ENST00000307465 2565 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 CCDC112-201ENST00000379611 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 TTC8-205ENST00000358622 2297 ntTSL 5 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 DYNC1I1-205ENST00000447467 2947 ntAPPRIS ALT1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 CEP89-207ENST00000591863 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 DDI1-201ENST00000302259 2609 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 TUBB4AP1-201ENST00000450755 1325 ntBASIC8.71□□□□□ -1.02
LINC00643Q86TS7 DERL1-201ENST00000259512 3340 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 NNT-202ENST00000344920 4310 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 NKTR-201ENST00000232978 7343 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 MTRF1L-203ENST00000367233 3676 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 NPC1L1-201ENST00000289547 5048 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 ZFP69B-201ENST00000361584 2029 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 PDHA1-213ENST00000545074 3391 ntAPPRIS ALT1 TSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 PEG3-202ENST00000593695 4741 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 SIN3A-208ENST00000567289 4078 ntTSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 MX1-201ENST00000288383 2733 ntTSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 ELP4-202ENST00000379163 1700 ntTSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 RNF4-222ENST00000541204 2796 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 SCNN1D-202ENST00000338555 3475 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 SPRY4-201ENST00000344120 4938 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 LINC02228-202ENST00000641261 2489 ntBASIC8.71□□□□□ -1.02
LINC00643Q86TS7 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 PPP1R18-202ENST00000399199 2853 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 AP1B1-203ENST00000402502 2935 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 ALAS1-201ENST00000310271 2212 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 RHOH-222ENST00000617441 1872 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 AL137783.1-201ENST00000623494 1896 ntBASIC8.7□□□□□ -1.02
LINC00643Q86TS7 ZC3H13-202ENST00000282007 6412 ntAPPRIS P3 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 APLF-201ENST00000303795 3847 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 C1orf198-203ENST00000470540 3819 ntAPPRIS ALT2 TSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 TMEM185A-210ENST00000613273 1913 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 TYRO3-202ENST00000559066 3876 ntAPPRIS ALT2 TSL 5 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 ACOXL-202ENST00000389811 2714 ntAPPRIS P1 TSL 5 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 ATP2A1-201ENST00000357084 3532 ntTSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 LAMB3-202ENST00000367030 3931 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 ARHGEF3-213ENST00000496106 1994 ntTSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 AL157414.3-201ENST00000624276 1954 ntBASIC8.7□□□□□ -1.02
LINC00643Q86TS7 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 HGNC:18790-209ENST00000513555 3291 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 SPATA6-203ENST00000371847 4973 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 EPS8L3-201ENST00000361852 2130 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 ADAMTS4-202ENST00000367996 9773 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 AL133267.1-201ENST00000398220 340 ntBASIC8.7□□□□□ -1.02
LINC00643Q86TS7 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 TOB2P1-201ENST00000469761 992 ntBASIC8.7□□□□□ -1.02
LINC00643Q86TS7 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 AL805961.1-202ENST00000641562 540 ntBASIC8.7□□□□□ -1.02
LINC00643Q86TS7 GPALPP1-202ENST00000361121 3410 ntAPPRIS ALT1 TSL 5 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 CDK16-201ENST00000276052 3016 ntTSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 LAMA4-201ENST00000230538 6547 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 EPB41L1-203ENST00000373941 2652 ntAPPRIS ALT1 TSL 5 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 AL590483.3-201ENST00000623669 3580 ntBASIC8.7□□□□□ -1.02
LINC00643Q86TS7 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 FOSB-202ENST00000417353 3667 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 TTC30A-201ENST00000355689 5975 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 AC037459.3-201ENST00000521025 2750 ntBASIC8.7□□□□□ -1.02
LINC00643Q86TS7 ADGRE2-206ENST00000594294 2325 ntTSL 5 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 PAK1-202ENST00000356341 3737 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 DNAH2-203ENST00000572933 14955 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 GLYR1-201ENST00000321919 3772 ntAPPRIS P3 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 NFE2L1-203ENST00000362042 4774 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 MASP2-201ENST00000400897 2439 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 NFE2L1-222ENST00000585291 4390 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 C19orf44-201ENST00000221671 3427 ntAPPRIS P3 TSL 2 BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 LRRC55-201ENST00000497933 5410 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 SYT10-201ENST00000228567 4461 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
LINC00643Q86TS7 GABBR1-201ENST00000355973 3506 ntTSL 2 BASIC8.7□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms