RNA–Protein interactions for RNA: ENST00000230538.11

LAMA4-201, Transcript of laminin subunit alpha 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LAMA4, Length 6,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA4-201ENST00000230538 DCAF8L2P0C7V8 631 aa19.86■□□□□ 0.77
LAMA4-201ENST00000230538 SUPT5HO00267 1087 aaKnown RBP18.88■□□□□ 0.61
LAMA4-201ENST00000230538 SHROOM4Q9ULL8 1493 aa18.57■□□□□ 0.56
LAMA4-201ENST00000230538 NISCHQ9Y2I1 1504 aa18.56■□□□□ 0.56
LAMA4-201ENST00000230538 EHMT2Q96KQ7 1210 aa18.5■□□□□ 0.55
LAMA4-201ENST00000230538 PELP1Q8IZL8 1130 aaKnown RBP18.38■□□□□ 0.53
LAMA4-201ENST00000230538 APLP2Q06481 763 aa18.14■□□□□ 0.49
LAMA4-201ENST00000230538 TTBK1Q5TCY1 1321 aaPredicted RBP17.89■□□□□ 0.45
LAMA4-201ENST00000230538 FAM9AQ8IZU1 332 aaPredicted RBP17.87■□□□□ 0.45
LAMA4-201ENST00000230538 PCGF6Q9BYE7 350 aa17.81■□□□□ 0.44
LAMA4-201ENST00000230538 ERICH6Q7L0X2 663 aa17.68■□□□□ 0.42
LAMA4-201ENST00000230538 RANGAP1P46060 587 aaPredicted RBP17.6■□□□□ 0.41
LAMA4-201ENST00000230538 CENPBP07199 599 aaPredicted RBP17.59■□□□□ 0.41
LAMA4-201ENST00000230538 CCER1Q8TC90 406 aaPredicted RBP17.57■□□□□ 0.4
LAMA4-201ENST00000230538 ATP1B4Q9UN42 357 aaPredicted RBP17.5■□□□□ 0.39
LAMA4-201ENST00000230538 ZEB1P37275 1124 aaPredicted RBP17.5■□□□□ 0.39
LAMA4-201ENST00000230538 TRIM41Q8WV44 630 aa17.43■□□□□ 0.38
LAMA4-201ENST00000230538 UBTFP17480 764 aaKnown RBP17.31■□□□□ 0.36
LAMA4-201ENST00000230538 YTHDC1Q96MU7 727 aaKnown RBP17.3■□□□□ 0.36
LAMA4-201ENST00000230538 NEFLP07196 543 aa17.3■□□□□ 0.36
LAMA4-201ENST00000230538 PPARGC1BQ86YN6 1023 aaKnown RBP17.18■□□□□ 0.34
LAMA4-201ENST00000230538 MYT1Q01538 1121 aa17.01■□□□□ 0.31
LAMA4-201ENST00000230538 TRIM26Q12899 539 aaPredicted RBP16.95■□□□□ 0.3
LAMA4-201ENST00000230538 DAXXQ9UER7 740 aaPredicted RBP16.9■□□□□ 0.3
LAMA4-201ENST00000230538 MYT1LQ9UL68 1186 aa16.88■□□□□ 0.29
LAMA4-201ENST00000230538 POLR3GLQ9BT43 218 aa16.87■□□□□ 0.29
LAMA4-201ENST00000230538 ITGAEP38570 1179 aa16.85■□□□□ 0.29
LAMA4-201ENST00000230538 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.83■□□□□ 0.28
LAMA4-201ENST00000230538 HNRNPUL2Q1KMD3 747 aaKnown RBP16.83■□□□□ 0.28
LAMA4-201ENST00000230538 HRCP23327 699 aa16.82■□□□□ 0.28
LAMA4-201ENST00000230538 LOC105371045A0A1W2PR82 267 aa16.77■□□□□ 0.27
LAMA4-201ENST00000230538 CNGB1Q14028 1251 aaPredicted RBP16.69■□□□□ 0.26
LAMA4-201ENST00000230538 CHIC1Q5VXU3 224 aa16.6■□□□□ 0.25
LAMA4-201ENST00000230538 SLC4A1APQ9BWU0 796 aaKnown RBP16.6■□□□□ 0.25
LAMA4-201ENST00000230538 ZNF316A6NFI3 1004 aaPredicted RBP16.5■□□□□ 0.23
LAMA4-201ENST00000230538 CLSPNQ9HAW4 1339 aa16.48■□□□□ 0.23
LAMA4-201ENST00000230538 DIEXFQ68CQ4 756 aaKnown RBP16.47■□□□□ 0.23
LAMA4-201ENST00000230538 RTL5Q5HYW3 569 aaPredicted RBP16.45■□□□□ 0.22
LAMA4-201ENST00000230538 FAM50AQ14320 339 aaKnown RBP16.39■□□□□ 0.21
LAMA4-201ENST00000230538 TRIM52Q96A61 297 aa16.34■□□□□ 0.21
LAMA4-201ENST00000230538 NEUROD1Q13562 356 aa16.3■□□□□ 0.2
LAMA4-201ENST00000230538 BCANQ96GW7 911 aa16.28■□□□□ 0.2
LAMA4-201ENST00000230538 GTF3C3Q9Y5Q9 886 aa16.21■□□□□ 0.19
LAMA4-201ENST00000230538 ZNF326Q5BKZ1 582 aaKnown RBP16.18■□□□□ 0.18
LAMA4-201ENST00000230538 ZBTB47Q9UFB7 747 aaPredicted RBP16.17■□□□□ 0.18
LAMA4-201ENST00000230538 ANP32CO43423 234 aa16.17■□□□□ 0.18
LAMA4-201ENST00000230538 CDK11AQ9UQ88 783 aaPredicted RBP16.12■□□□□ 0.17
LAMA4-201ENST00000230538 PABPN1Q86U42 306 aaKnown RBP eCLIP16.11■□□□□ 0.17
LAMA4-201ENST00000230538 CANXP27824 592 aaKnown RBP16.07■□□□□ 0.16
LAMA4-201ENST00000230538 SLC24A1O60721 1099 aa16.06■□□□□ 0.16
LAMA4-201ENST00000230538 ABCC9O60706 1549 aa16.03■□□□□ 0.16
LAMA4-201ENST00000230538 BCL11AQ9H165 835 aa16.03■□□□□ 0.16
LAMA4-201ENST00000230538 FBLN2P98095 1184 aa16.01■□□□□ 0.15
LAMA4-201ENST00000230538 NEFMP07197 916 aa15.98■□□□□ 0.15
LAMA4-201ENST00000230538 ACIN1Q9UKV3 1341 aaKnown RBP15.9■□□□□ 0.14
LAMA4-201ENST00000230538 P3H3Q8IVL6 736 aa15.9■□□□□ 0.14
LAMA4-201ENST00000230538 ARID3CA6NKF2 412 aa15.89■□□□□ 0.13
LAMA4-201ENST00000230538 ANP32AP39687 249 aaKnown RBP15.88■□□□□ 0.13
LAMA4-201ENST00000230538 ZNF777Q9ULD5 760 aaPredicted RBP15.83■□□□□ 0.12
LAMA4-201ENST00000230538 NPM2Q86SE8 214 aaKnown RBP15.82■□□□□ 0.12
LAMA4-201ENST00000230538 FKBP8Q14318 412 aa15.74■□□□□ 0.11
LAMA4-201ENST00000230538 CSRNP3Q8WYN3 585 aa15.73■□□□□ 0.11
LAMA4-201ENST00000230538 ANP32BQ92688 251 aaKnown RBP15.71■□□□□ 0.1
LAMA4-201ENST00000230538 ESF1Q9H501 851 aaKnown RBP15.7■□□□□ 0.1
LAMA4-201ENST00000230538 HSP90AA1P07900 732 aaKnown RBP15.69■□□□□ 0.1
LAMA4-201ENST00000230538 TONSLQ96HA7 1378 aa15.67■□□□□ 0.1
LAMA4-201ENST00000230538 CHGAP10645 457 aaKnown RBP15.67■□□□□ 0.1
LAMA4-201ENST00000230538 STAG3Q9UJ98 1225 aa15.66■□□□□ 0.1
LAMA4-201ENST00000230538 SCRIBQ14160 1630 aa15.65■□□□□ 0.1
LAMA4-201ENST00000230538 UPF2Q9HAU5 1272 aaKnown RBP15.65■□□□□ 0.1
LAMA4-201ENST00000230538 FAM9BQ8IZU0 186 aa15.62■□□□□ 0.09
LAMA4-201ENST00000230538 HNRNPUQ00839 825 aaKnown RBP eCLIP15.62■□□□□ 0.09
LAMA4-201ENST00000230538 DDX10Q13206 875 aaKnown RBP15.6■□□□□ 0.09
LAMA4-201ENST00000230538 EIF5BO60841 1220 aaKnown RBP15.58■□□□□ 0.09
LAMA4-201ENST00000230538 SALL2Q9Y467 1007 aaPredicted RBP15.58■□□□□ 0.08
LAMA4-201ENST00000230538 PLPPR3Q6T4P5 718 aa15.58■□□□□ 0.08
LAMA4-201ENST00000230538 DCAF1Q9Y4B6 1507 aa15.58■□□□□ 0.08
LAMA4-201ENST00000230538 NBR1Q14596 966 aa15.51■□□□□ 0.07
LAMA4-201ENST00000230538 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.51■□□□□ 0.07
LAMA4-201ENST00000230538 TMC1Q8TDI8 760 aa15.51■□□□□ 0.07
LAMA4-201ENST00000230538 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.5■□□□□ 0.07
LAMA4-201ENST00000230538 CCDC136Q96JN2 1154 aa15.5■□□□□ 0.07
LAMA4-201ENST00000230538 NPM1P06748 294 aaKnown RBP eCLIP15.49■□□□□ 0.07
LAMA4-201ENST00000230538 CHIC2Q9UKJ5 165 aa15.49■□□□□ 0.07
LAMA4-201ENST00000230538 WDR43Q15061 677 aaKnown RBP eCLIP15.49■□□□□ 0.07
LAMA4-201ENST00000230538 IRX6P78412 446 aaPredicted RBP15.44■□□□□ 0.06
LAMA4-201ENST00000230538 ARXQ96QS3 562 aa15.42■□□□□ 0.06
LAMA4-201ENST00000230538 KDM2AQ9Y2K7 1162 aa15.42■□□□□ 0.06
LAMA4-201ENST00000230538 SCAF1Q9H7N4 1312 aaKnown RBP15.41■□□□□ 0.06
LAMA4-201ENST00000230538 MIER1Q8N108 512 aa15.41■□□□□ 0.06
LAMA4-201ENST00000230538 HIRIP3Q9BW71 556 aaPredicted RBP15.41■□□□□ 0.06
LAMA4-201ENST00000230538 MRS2Q9HD23 443 aa15.41■□□□□ 0.06
LAMA4-201ENST00000230538 GLIPR1L2Q4G1C9 344 aa15.39■□□□□ 0.05
LAMA4-201ENST00000230538 MYH16Q9H6N6 1097 aa15.37■□□□□ 0.05
LAMA4-201ENST00000230538 TSPY4P0CV99 314 aa15.36■□□□□ 0.05
LAMA4-201ENST00000230538 TSPY10P0CW01 314 aa15.36■□□□□ 0.05
LAMA4-201ENST00000230538 ZCCHC6Q5VYS8 1495 aaKnown RBP15.36■□□□□ 0.05
LAMA4-201ENST00000230538 MTUS2Q5JR59 1369 aa15.32■□□□□ 0.04
LAMA4-201ENST00000230538 A0A0G2JS52 829 aa15.29■□□□□ 0.04
LAMA4-201ENST00000230538 MYO15BQ96JP2 1530 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms