Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC17.08■□□□□ 0.32
COL5A3P25940 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL5A3P25940 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC17.08■□□□□ 0.32
COL5A3P25940 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL5A3P25940 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL5A3P25940 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC17.08■□□□□ 0.32
COL5A3P25940 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COL5A3P25940 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.08■□□□□ 0.32
COL5A3P25940 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL5A3P25940 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC17.08■□□□□ 0.32
COL5A3P25940 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.08■□□□□ 0.32
COL5A3P25940 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC17.08■□□□□ 0.32
COL5A3P25940 AL157996.1-201ENST00000624684 2299 ntBASIC17.07■□□□□ 0.32
COL5A3P25940 AC152010.1-201ENST00000415779 2006 ntBASIC17.07■□□□□ 0.32
COL5A3P25940 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.07■□□□□ 0.32
COL5A3P25940 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 AC091807.1-201ENST00000418838 1544 ntBASIC17.07■□□□□ 0.32
COL5A3P25940 AP000346.2-202ENST00000425948 383 ntBASIC17.07■□□□□ 0.32
COL5A3P25940 NR1I3-210ENST00000437437 973 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 HNRNPA1P3-201ENST00000440968 551 ntBASIC17.07■□□□□ 0.32
COL5A3P25940 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC17.07■□□□□ 0.32
COL5A3P25940 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC17.07■□□□□ 0.32
COL5A3P25940 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
COL5A3P25940 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.07■□□□□ 0.32
COL5A3P25940 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.07■□□□□ 0.32
COL5A3P25940 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL5A3P25940 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL5A3P25940 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 AC024475.2-201ENST00000312173 879 ntBASIC17.07■□□□□ 0.32
COL5A3P25940 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
COL5A3P25940 IQCF4-203ENST00000428561 420 ntBASIC17.07■□□□□ 0.32
COL5A3P25940 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC17.07■□□□□ 0.32
COL5A3P25940 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC17.07■□□□□ 0.32
COL5A3P25940 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC17.07■□□□□ 0.32
COL5A3P25940 OR3A1-202ENST00000615105 966 ntBASIC17.07■□□□□ 0.32
COL5A3P25940 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A3P25940 LINC02486-201ENST00000604157 3000 ntBASIC17.07■□□□□ 0.32
COL5A3P25940 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 STT3A-211ENST00000529196 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
COL5A3P25940 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.06■□□□□ 0.32
COL5A3P25940 AC008038.1-201ENST00000634247 1314 ntBASIC17.06■□□□□ 0.32
COL5A3P25940 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
COL5A3P25940 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC17.06■□□□□ 0.32
COL5A3P25940 AL357558.2-201ENST00000431915 425 ntTSL 2 BASIC17.06■□□□□ 0.32
COL5A3P25940 CA5BP1-205ENST00000435806 1064 ntBASIC17.06■□□□□ 0.32
COL5A3P25940 AC053503.3-201ENST00000448375 114 ntBASIC17.06■□□□□ 0.32
COL5A3P25940 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC17.06■□□□□ 0.32
COL5A3P25940 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC17.06■□□□□ 0.32
COL5A3P25940 RPL10P8-201ENST00000522888 313 ntBASIC17.06■□□□□ 0.32
COL5A3P25940 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC17.06■□□□□ 0.32
COL5A3P25940 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC17.06■□□□□ 0.32
COL5A3P25940 AC254633.1-201ENST00000606790 345 ntBASIC17.06■□□□□ 0.32
COL5A3P25940 AC010601.2-201ENST00000623060 774 ntBASIC17.06■□□□□ 0.32
COL5A3P25940 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC17.06■□□□□ 0.32
COL5A3P25940 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A3P25940 RPL4P6-201ENST00000438116 1304 ntBASIC17.06■□□□□ 0.32
COL5A3P25940 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
COL5A3P25940 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC17.05■□□□□ 0.32
COL5A3P25940 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL5A3P25940 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.05■□□□□ 0.32
COL5A3P25940 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A3P25940 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.05■□□□□ 0.32
COL5A3P25940 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC17.05■□□□□ 0.32
COL5A3P25940 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL5A3P25940 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC17.05■□□□□ 0.32
COL5A3P25940 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL5A3P25940 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A3P25940 AC005822.1-201ENST00000414124 1034 ntBASIC17.05■□□□□ 0.32
COL5A3P25940 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC17.05■□□□□ 0.32
COL5A3P25940 ASLP1-201ENST00000428790 637 ntBASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 144.1 ms