Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
IFT140Q96RY7 ECM1-203ENST00000369049 1925 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
IFT140Q96RY7 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC22.43■■□□□ 1.18
IFT140Q96RY7 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
IFT140Q96RY7 AC004554.2-201ENST00000634846 1893 ntTSL 5 BASIC22.42■■□□□ 1.18
IFT140Q96RY7 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC22.42■■□□□ 1.18
IFT140Q96RY7 HIST1H3H-201ENST00000369163 1237 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
IFT140Q96RY7 SUSD3-201ENST00000375469 1114 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
IFT140Q96RY7 MRPS16P3-201ENST00000415961 374 ntBASIC22.42■■□□□ 1.18
IFT140Q96RY7 AC159540.1-201ENST00000422600 555 ntTSL 4 BASIC22.42■■□□□ 1.18
IFT140Q96RY7 RN7SL460P-201ENST00000582806 258 ntBASIC22.42■■□□□ 1.18
IFT140Q96RY7 AL121992.3-201ENST00000606186 346 ntBASIC22.42■■□□□ 1.18
IFT140Q96RY7 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC22.42■■□□□ 1.18
IFT140Q96RY7 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
IFT140Q96RY7 ZDHHC8P1-202ENST00000418264 1403 ntBASIC22.42■■□□□ 1.18
IFT140Q96RY7 COMMD10-207ENST00000632434 1433 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
IFT140Q96RY7 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC22.42■■□□□ 1.18
IFT140Q96RY7 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
IFT140Q96RY7 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
IFT140Q96RY7 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC22.42■■□□□ 1.18
IFT140Q96RY7 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC22.42■■□□□ 1.18
IFT140Q96RY7 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC22.42■■□□□ 1.18
IFT140Q96RY7 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
IFT140Q96RY7 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
IFT140Q96RY7 WRB-202ENST00000380708 1464 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
IFT140Q96RY7 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 ATP6V1B1-AS1-201ENST00000422761 1129 ntTSL 2 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 AC069277.1-201ENST00000433639 1083 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 LINC02151-201ENST00000452629 921 ntTSL 2 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 AC025048.4-201ENST00000589740 699 ntTSL 3 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 AC091736.1-201ENST00000609370 305 ntBASIC22.41■■□□□ 1.18
IFT140Q96RY7 TCP1-215ENST00000544255 1403 ntTSL 5 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 GSN-215ENST00000545652 2428 ntTSL 2 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 KATNAL1-202ENST00000380617 1634 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 A1BG-AS1-203ENST00000594950 1718 ntTSL 2 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 CR769775.1-203ENST00000399894 579 ntTSL 3 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 ZNF589-202ENST00000412564 593 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 AL450322.2-201ENST00000421629 759 ntTSL 3 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 RPE-208ENST00000436630 1128 ntTSL 2 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 ADPGK-202ENST00000456471 808 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 EEF1GP1-201ENST00000457231 1299 ntBASIC22.41■■□□□ 1.18
IFT140Q96RY7 FDPS-206ENST00000467076 1178 ntAPPRIS ALT1 TSL 3 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 AC100797.1-201ENST00000520760 316 ntTSL 2 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 AC079336.3-201ENST00000577227 475 ntTSL 3 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 BRCA1-225ENST00000586385 781 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
IFT140Q96RY7 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC22.41■■□□□ 1.18
IFT140Q96RY7 AL133551.1-201ENST00000610279 1222 ntBASIC22.41■■□□□ 1.18
IFT140Q96RY7 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 HTR7P1-202ENST00000624664 4411 ntBASIC22.4■■□□□ 1.18
IFT140Q96RY7 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 OLFML1-204ENST00000530135 1620 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 MECR-202ENST00000373791 2416 ntTSL 2 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 LINC02154-201ENST00000412485 1497 ntTSL 2 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 AC061965.1-201ENST00000560524 1465 ntBASIC22.4■■□□□ 1.18
IFT140Q96RY7 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 ERG-211ENST00000453032 1595 ntTSL 2 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 ORC5-203ENST00000447452 1409 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 TMEM79-202ENST00000357501 975 ntTSL 3 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 AL606970.2-201ENST00000434596 470 ntTSL 3 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 AC022447.2-201ENST00000509750 543 ntTSL 3 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 AC127496.3-201ENST00000576032 494 ntTSL 3 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 AC006547.1-206ENST00000600617 878 ntTSL 5 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 MRPL34-206ENST00000602206 603 ntTSL 3 BASIC22.4■■□□□ 1.18
IFT140Q96RY7 AC007274.3-201ENST00000619838 385 ntBASIC22.4■■□□□ 1.18
IFT140Q96RY7 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms