Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.16■□□□□ 0.18
ERCC4Q92889 AC015936.2-201ENST00000593177 259 ntBASIC16.16■□□□□ 0.18
ERCC4Q92889 AC102953.2-201ENST00000609755 3026 ntBASIC16.16■□□□□ 0.18
ERCC4Q92889 PCDHB18P-202ENST00000526308 3197 ntBASIC16.16■□□□□ 0.18
ERCC4Q92889 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.16■□□□□ 0.18
ERCC4Q92889 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.16■□□□□ 0.18
ERCC4Q92889 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 AL118506.1-201ENST00000601296 3082 ntBASIC16.15■□□□□ 0.18
ERCC4Q92889 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
ERCC4Q92889 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC16.15■□□□□ 0.18
ERCC4Q92889 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 AL596325.1-201ENST00000563991 1082 ntBASIC16.15■□□□□ 0.18
ERCC4Q92889 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.15■□□□□ 0.18
ERCC4Q92889 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
ERCC4Q92889 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC16.15■□□□□ 0.18
ERCC4Q92889 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ERCC4Q92889 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC16.15■□□□□ 0.18
ERCC4Q92889 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
ERCC4Q92889 AC244394.1-201ENST00000435000 1665 ntBASIC16.14■□□□□ 0.18
ERCC4Q92889 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
ERCC4Q92889 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC16.14■□□□□ 0.18
ERCC4Q92889 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
ERCC4Q92889 REXO1L6P-201ENST00000603433 1515 ntBASIC16.14■□□□□ 0.18
ERCC4Q92889 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.14■□□□□ 0.17
ERCC4Q92889 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC16.14■□□□□ 0.17
ERCC4Q92889 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC16.14■□□□□ 0.17
ERCC4Q92889 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
ERCC4Q92889 MIR193BHG-211ENST00000641433 5365 ntBASIC16.14■□□□□ 0.17
ERCC4Q92889 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC16.14■□□□□ 0.17
ERCC4Q92889 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC16.14■□□□□ 0.17
ERCC4Q92889 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.14■□□□□ 0.17
ERCC4Q92889 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.14■□□□□ 0.17
ERCC4Q92889 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ERCC4Q92889 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
ERCC4Q92889 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
ERCC4Q92889 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.14■□□□□ 0.17
ERCC4Q92889 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.14■□□□□ 0.17
ERCC4Q92889 AC005225.4-201ENST00000557330 545 ntBASIC16.14■□□□□ 0.17
ERCC4Q92889 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.14■□□□□ 0.17
ERCC4Q92889 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms