Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 ZNF493-208ENST00000599461 1769 ntBASIC21.68■■□□□ 1.06
VPS8Q8N3P4 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 AL513497.1-201ENST00000624273 2083 ntBASIC21.68■■□□□ 1.06
VPS8Q8N3P4 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 PFN2-212ENST00000490975 858 ntTSL 4 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS8Q8N3P4 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 AC025271.4-201ENST00000621477 1726 ntBASIC21.67■■□□□ 1.06
VPS8Q8N3P4 AC021305.1-201ENST00000520656 1514 ntBASIC21.67■■□□□ 1.06
VPS8Q8N3P4 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 CTBP2P8-201ENST00000422584 1330 ntBASIC21.67■■□□□ 1.06
VPS8Q8N3P4 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 DDC-214ENST00000622873 1839 ntTSL 3 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS8Q8N3P4 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 CFL1P6-201ENST00000400899 494 ntBASIC21.66■■□□□ 1.06
VPS8Q8N3P4 AC093909.3-201ENST00000504783 336 ntBASIC21.66■■□□□ 1.06
VPS8Q8N3P4 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 AC084752.1-201ENST00000509766 622 ntBASIC21.66■■□□□ 1.06
VPS8Q8N3P4 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 AL359219.1-201ENST00000556311 934 ntBASIC21.66■■□□□ 1.06
VPS8Q8N3P4 AC135782.3-201ENST00000562782 2105 ntBASIC21.66■■□□□ 1.06
VPS8Q8N3P4 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS8Q8N3P4 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms