Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 PIK3C2B-204ENST00000424712 7522 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 LOX-201ENST00000231004 5102 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 CYP2AB1P-202ENST00000454440 1456 ntBASIC8.72□□□□□ -1.01
LINC00643Q86TS7 MYO7B-202ENST00000409816 6694 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 TOMM40L-202ENST00000367988 2708 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 GUCY1A3-205ENST00000506455 2715 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 THSD1-201ENST00000258613 2962 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 JAK3-204ENST00000527670 3996 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 ACACB-202ENST00000377848 9247 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 VWCE-208ENST00000613271 3032 ntTSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 FOSL2-202ENST00000379619 5829 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 SHPRH-201ENST00000275233 6649 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 PRYP6-201ENST00000514804 343 ntBASIC8.72□□□□□ -1.01
LINC00643Q86TS7 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 RNF151-202ENST00000569210 853 ntTSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 TBCB-211ENST00000589996 724 ntTSL 3 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 APBA2-202ENST00000411764 3599 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 NIN-201ENST00000245441 10293 ntAPPRIS P5 TSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 INTS8-217ENST00000523731 4633 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 UTP3-201ENST00000254803 2073 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 EIF4E3-205ENST00000448225 6209 ntTSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 HS6ST2-202ENST00000370836 4441 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 DPY19L3-201ENST00000342179 6015 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 ARHGAP25-201ENST00000409030 2936 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 ARHGAP25-203ENST00000409220 2939 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 SLC22A12-204ENST00000377574 3206 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 VAC14-AS1-202ENST00000562507 4853 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 BARD1-212ENST00000617164 5449 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 LINC01119-202ENST00000468141 2157 ntTSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 NUDCD3-202ENST00000355451 8256 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 RHOH-221ENST00000615577 2227 ntAPPRIS P1 TSL 3 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 RHOH-223ENST00000619474 2230 ntAPPRIS P1 TSL 4 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 LPIN1-209ENST00000449576 3077 ntTSL 2 BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 AC020917.4-201ENST00000623994 1999 ntBASIC8.72□□□□□ -1.01
LINC00643Q86TS7 PGGHG-203ENST00000409548 3687 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
LINC00643Q86TS7 OLFML2A-201ENST00000288815 5964 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 ERBB2-204ENST00000541774 4341 ntTSL 5 BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 PTK2B-203ENST00000397501 4719 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 KLK2-203ENST00000391810 2674 ntTSL 2 BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 PRKACB-206ENST00000370689 4513 ntAPPRIS ALT1 TSL 1 (best) BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 CYP1A2-201ENST00000343932 2728 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 FBLN5-201ENST00000267620 2423 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 CHAT-202ENST00000339797 2124 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 CHAT-204ENST00000395559 2114 ntAPPRIS ALT2 TSL 5 BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 ABCC12-201ENST00000311303 5168 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 EPPK1-201ENST00000568225 15530 ntAPPRIS ALT2 BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 CBFA2T2-205ENST00000375279 7617 ntTSL 5 BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 DGKZP1-201ENST00000378718 2776 ntBASIC8.71□□□□□ -1.01
LINC00643Q86TS7 KIZ-208ENST00000616848 1875 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.01
LINC00643Q86TS7 ELN-201ENST00000252034 3781 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 CYFIP1-207ENST00000617556 5674 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 BAHD1-202ENST00000560846 4432 ntAPPRIS ALT1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 SYNPO2L-201ENST00000372873 4121 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 MATR3-233ENST00000504203 2243 ntTSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 RP2-201ENST00000218340 3803 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 UNC93B2-201ENST00000285383 730 ntBASIC8.71□□□□□ -1.02
LINC00643Q86TS7 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 HMGA1P7-201ENST00000406908 502 ntBASIC8.71□□□□□ -1.02
LINC00643Q86TS7 HMGA1P5-201ENST00000412453 271 ntBASIC8.71□□□□□ -1.02
LINC00643Q86TS7 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 AC092597.1-201ENST00000487352 616 ntBASIC8.71□□□□□ -1.02
LINC00643Q86TS7 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
LINC00643Q86TS7 FAM87A-204ENST00000613235 858 ntBASIC8.71□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms