Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC88AQ3V6T2 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 HMGA1P2-201ENST00000430198 324 ntBASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 CDC37P2-201ENST00000562287 1029 ntBASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 AL359092.2-201ENST00000423330 585 ntBASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 AP000533.1-201ENST00000456143 1177 ntBASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 AP001462.1-201ENST00000594089 452 ntBASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 RCC2P1-201ENST00000452257 1476 ntBASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.88■□□□□ 0.29
CCDC88AQ3V6T2 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 SALL4P6-201ENST00000429385 1691 ntBASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 AC010086.2-201ENST00000428616 226 ntBASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 INO80E-209ENST00000567254 625 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 CLPP-205ENST00000596605 646 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 PES1P2-201ENST00000449745 1735 ntBASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC88AQ3V6T2 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 POP5-201ENST00000341039 913 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 GH1-203ENST00000351388 685 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 SRPK2P-201ENST00000523408 1100 ntBASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 CCND3P2-201ENST00000579393 537 ntBASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 EEF1DP7-201ENST00000580496 513 ntBASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 AC138932.1-201ENST00000534164 6830 ntBASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms