Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
FOXA1P55317 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC13.75□□□□□ -0.21
FOXA1P55317 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA1P55317 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
FOXA1P55317 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA1P55317 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
FOXA1P55317 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
FOXA1P55317 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
FOXA1P55317 AC025183.3-201ENST00000623526 1482 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.74□□□□□ -0.21
FOXA1P55317 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 BEND3P3-201ENST00000611030 2440 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 AC131212.3-201ENST00000624087 4219 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 TP73-207ENST00000378290 1831 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 PCDHB18P-202ENST00000526308 3197 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 LINC00567-201ENST00000569854 3409 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.74□□□□□ -0.21
FOXA1P55317 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 AC136604.1-202ENST00000425471 771 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 FAM58BP-201ENST00000439056 645 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC13.74□□□□□ -0.21
FOXA1P55317 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC13.74□□□□□ -0.21
FOXA1P55317 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.74□□□□□ -0.21
FOXA1P55317 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 KRT17P8-201ENST00000540749 863 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 AC005730.2-201ENST00000564549 1184 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 AC106886.1-201ENST00000568660 600 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.74□□□□□ -0.21
FOXA1P55317 MIR3197-201ENST00000582241 73 ntBASIC13.74□□□□□ -0.21
FOXA1P55317 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA1P55317 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA1P55317 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
FOXA1P55317 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA1P55317 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 FMO6P-201ENST00000236166 1620 ntBASIC13.73□□□□□ -0.21
FOXA1P55317 NME1-209ENST00000511355 1645 ntTSL 5 BASIC13.73□□□□□ -0.21
FOXA1P55317 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
FOXA1P55317 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA1P55317 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA1P55317 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
FOXA1P55317 AC079776.1-201ENST00000401540 1152 ntBASIC13.73□□□□□ -0.21
FOXA1P55317 BOLA2P3-201ENST00000404566 256 ntBASIC13.73□□□□□ -0.21
FOXA1P55317 MIR1909-201ENST00000411312 80 ntBASIC13.73□□□□□ -0.21
FOXA1P55317 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC13.73□□□□□ -0.21
FOXA1P55317 VDAC1P1-201ENST00000439229 848 ntBASIC13.73□□□□□ -0.21
FOXA1P55317 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms