Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC16.89■□□□□ 0.29
CLIP2Q9UDT6 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP2Q9UDT6 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP2Q9UDT6 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP2Q9UDT6 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP2Q9UDT6 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CLIP2Q9UDT6 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 LAP3P2-201ENST00000454686 1454 ntBASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 HLA-DPB2-205ENST00000435074 1188 ntBASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 RPSAP15-201ENST00000448168 861 ntBASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 RN7SL277P-201ENST00000481521 288 ntBASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 COG4-212ENST00000564653 590 ntTSL 5 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 MIR3677-201ENST00000578964 60 ntBASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 MIR6074-201ENST00000612054 107 ntBASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLIP2Q9UDT6 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 AC105206.1-202ENST00000314927 2368 ntBASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 RPS9P1-201ENST00000419943 583 ntBASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 AC140658.4-201ENST00000561990 352 ntBASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 AC128714.1-201ENST00000637035 887 ntBASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 KRT18P9-201ENST00000604826 1300 ntBASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP2Q9UDT6 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CLIP2Q9UDT6 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP2Q9UDT6 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms