Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.36□□□□□ -0.27
AMBRA1Q9C0C7 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 PDIA3P1-201ENST00000471856 1510 ntBASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 RPL7P3-201ENST00000441388 714 ntBASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 AL590640.2-201ENST00000457038 527 ntBASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 AC007551.1-201ENST00000457394 519 ntBASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 MEX3B-202ENST00000558133 4333 ntBASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 AC073869.1-201ENST00000415574 2762 ntBASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
AMBRA1Q9C0C7 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 PCDHB19P-202ENST00000625133 2914 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 LINC00567-201ENST00000569854 3409 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 CD8B2-202ENST00000417670 633 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 CNN2P8-201ENST00000421872 913 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 C2orf27AP3-201ENST00000434123 579 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 AC119751.2-201ENST00000504529 210 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 RNA5SP486-201ENST00000515961 83 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 SNX29P1-201ENST00000548357 1007 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 AC008825.2-201ENST00000603374 718 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 AL354718.3-201ENST00000616414 581 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 CR382287.1-201ENST00000623954 586 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 AC068587.10-201ENST00000641210 219 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 AC115284.2-201ENST00000624646 2054 ntBASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms