Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
RAE1P78406 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
RAE1P78406 AC107918.4-201ENST00000641966 3141 ntBASIC13.44□□□□□ -0.26
RAE1P78406 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RAE1P78406 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.44□□□□□ -0.26
RAE1P78406 AC093462.1-201ENST00000621167 1683 ntBASIC13.44□□□□□ -0.26
RAE1P78406 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
RAE1P78406 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 KRT8P21-201ENST00000430398 1491 ntBASIC13.43□□□□□ -0.26
RAE1P78406 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.43□□□□□ -0.26
RAE1P78406 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 LINC00638-201ENST00000555578 2518 ntBASIC13.43□□□□□ -0.26
RAE1P78406 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
RAE1P78406 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 WBP2-203ENST00000433525 928 ntTSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 RPS2P32-201ENST00000439199 892 ntBASIC13.43□□□□□ -0.26
RAE1P78406 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 RHEB-207ENST00000496004 744 ntTSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 AC125604.1-201ENST00000496255 707 ntBASIC13.43□□□□□ -0.26
RAE1P78406 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.43□□□□□ -0.26
RAE1P78406 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC13.43□□□□□ -0.26
RAE1P78406 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.43□□□□□ -0.26
RAE1P78406 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.43□□□□□ -0.26
RAE1P78406 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.43□□□□□ -0.26
RAE1P78406 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.43□□□□□ -0.26
RAE1P78406 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.43□□□□□ -0.26
RAE1P78406 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
RAE1P78406 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 SBF1P1-201ENST00000444527 5631 ntBASIC13.43□□□□□ -0.26
RAE1P78406 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
RAE1P78406 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RAE1P78406 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.43□□□□□ -0.26
RAE1P78406 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC13.43□□□□□ -0.26
RAE1P78406 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
RAE1P78406 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
RAE1P78406 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.42□□□□□ -0.26
RAE1P78406 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC13.42□□□□□ -0.26
RAE1P78406 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.42□□□□□ -0.26
RAE1P78406 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
RAE1P78406 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.42□□□□□ -0.26
RAE1P78406 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 RN7SL530P-201ENST00000485097 298 ntBASIC13.42□□□□□ -0.26
RAE1P78406 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.42□□□□□ -0.26
RAE1P78406 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.42□□□□□ -0.26
RAE1P78406 CMC2-204ENST00000562713 573 ntTSL 3 BASIC13.42□□□□□ -0.26
RAE1P78406 CMC2-209ENST00000565108 399 ntTSL 2 BASIC13.42□□□□□ -0.26
RAE1P78406 AL451050.2-201ENST00000606967 682 ntBASIC13.42□□□□□ -0.26
RAE1P78406 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
RAE1P78406 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms