Protein–RNA interactions for Protein: P61758

VBP1, Prefoldin subunit 3, humanhuman

Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VBP1P61758 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC12.76□□□□□ -0.37
VBP1P61758 GLO1-201ENST00000373365 2012 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 DGKZ-204ENST00000454345 4086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC12.76□□□□□ -0.37
VBP1P61758 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
VBP1P61758 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC12.76□□□□□ -0.37
VBP1P61758 TNRC6B-203ENST00000402203 3444 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
VBP1P61758 CXCL5-201ENST00000296027 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC12.76□□□□□ -0.37
VBP1P61758 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.76□□□□□ -0.37
VBP1P61758 APOA1-205ENST00000375329 927 ntTSL 2 BASIC12.76□□□□□ -0.37
VBP1P61758 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.76□□□□□ -0.37
VBP1P61758 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC12.76□□□□□ -0.37
VBP1P61758 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC12.76□□□□□ -0.37
VBP1P61758 SDHAP3-202ENST00000515467 728 ntBASIC12.76□□□□□ -0.37
VBP1P61758 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.76□□□□□ -0.37
VBP1P61758 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.76□□□□□ -0.37
VBP1P61758 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC12.76□□□□□ -0.37
VBP1P61758 AC027237.1-201ENST00000560942 655 ntBASIC12.76□□□□□ -0.37
VBP1P61758 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC12.76□□□□□ -0.37
VBP1P61758 COX5A-206ENST00000568783 571 ntTSL 3 BASIC12.76□□□□□ -0.37
VBP1P61758 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC12.76□□□□□ -0.37
VBP1P61758 BX539320.1-201ENST00000623759 877 ntBASIC12.76□□□□□ -0.37
VBP1P61758 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 TUBB4AP1-201ENST00000450755 1325 ntBASIC12.76□□□□□ -0.37
VBP1P61758 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC12.76□□□□□ -0.37
VBP1P61758 MFSD8-241ENST00000641686 4991 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
VBP1P61758 KCNH1-202ENST00000367007 3445 ntTSL 5 BASIC12.76□□□□□ -0.37
VBP1P61758 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 GSTM3-201ENST00000256594 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
VBP1P61758 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VBP1P61758 AC008764.8-201ENST00000623966 2717 ntBASIC12.75□□□□□ -0.37
VBP1P61758 SKP2-209ENST00000620197 3255 ntTSL 2 BASIC12.75□□□□□ -0.37
VBP1P61758 VAMP1-201ENST00000361716 3449 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 PNMA3-203ENST00000619635 3627 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC12.75□□□□□ -0.37
VBP1P61758 MISP-201ENST00000215582 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
VBP1P61758 ERN2-201ENST00000256797 3549 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
VBP1P61758 CTAGE10P-201ENST00000318353 2408 ntBASIC12.75□□□□□ -0.37
VBP1P61758 PAX2-201ENST00000355243 4057 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 RPF1-202ENST00000370656 724 ntTSL 2 BASIC12.75□□□□□ -0.37
VBP1P61758 SCP2-203ENST00000371514 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC12.75□□□□□ -0.37
VBP1P61758 EPB41L1-206ENST00000373950 3631 ntTSL 5 BASIC12.75□□□□□ -0.37
VBP1P61758 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC12.75□□□□□ -0.37
VBP1P61758 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 CCDC3-202ENST00000378839 3180 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
VBP1P61758 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 GNB5-203ENST00000396335 2678 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC12.75□□□□□ -0.37
VBP1P61758 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 GPS2P2-201ENST00000430745 888 ntBASIC12.75□□□□□ -0.37
VBP1P61758 EIF3FP3-201ENST00000434851 1086 ntBASIC12.75□□□□□ -0.37
VBP1P61758 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 KIF9-207ENST00000444589 2791 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 ACTG1P14-201ENST00000446382 1122 ntBASIC12.75□□□□□ -0.37
VBP1P61758 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC12.75□□□□□ -0.37
VBP1P61758 RN7SL618P-201ENST00000477850 296 ntBASIC12.75□□□□□ -0.37
VBP1P61758 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
VBP1P61758 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
VBP1P61758 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC12.75□□□□□ -0.37
VBP1P61758 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC12.75□□□□□ -0.37
VBP1P61758 AC004466.1-201ENST00000599515 1080 ntBASIC12.75□□□□□ -0.37
VBP1P61758 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 PACSIN1-207ENST00000620693 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 DGKD-202ENST00000409813 6228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 GNAS-214ENST00000371100 4029 ntTSL 5 BASIC12.75□□□□□ -0.37
VBP1P61758 OFD1-203ENST00000380567 3736 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
VBP1P61758 UBR7-201ENST00000013070 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
VBP1P61758 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC12.75□□□□□ -0.37
VBP1P61758 ITFG2-201ENST00000228799 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
VBP1P61758 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
VBP1P61758 MICA-210ENST00000616296 2260 ntTSL 5 BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms