Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.69■□□□□ 0.26
MRE11P49959 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.69■□□□□ 0.26
MRE11P49959 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.69■□□□□ 0.26
MRE11P49959 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MRE11P49959 NPTN-IT1-201ENST00000628401 2283 ntBASIC16.69■□□□□ 0.26
MRE11P49959 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MRE11P49959 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.69■□□□□ 0.26
MRE11P49959 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MRE11P49959 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.69■□□□□ 0.26
MRE11P49959 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MRE11P49959 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC16.69■□□□□ 0.26
MRE11P49959 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MRE11P49959 FAM90A11P-201ENST00000518378 2218 ntBASIC16.69■□□□□ 0.26
MRE11P49959 KRT17P5-202ENST00000444070 2552 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MRE11P49959 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MRE11P49959 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
MRE11P49959 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC16.69■□□□□ 0.26
MRE11P49959 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MRE11P49959 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.68■□□□□ 0.26
MRE11P49959 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC16.68■□□□□ 0.26
MRE11P49959 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
MRE11P49959 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
MRE11P49959 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC16.68■□□□□ 0.26
MRE11P49959 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.68■□□□□ 0.26
MRE11P49959 AC005014.1-201ENST00000432006 2976 ntBASIC16.68■□□□□ 0.26
MRE11P49959 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.68■□□□□ 0.26
MRE11P49959 RPS2P36-201ENST00000456516 831 ntBASIC16.68■□□□□ 0.26
MRE11P49959 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.68■□□□□ 0.26
MRE11P49959 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.68■□□□□ 0.26
MRE11P49959 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC16.68■□□□□ 0.26
MRE11P49959 MIR7845-201ENST00000618396 99 ntBASIC16.68■□□□□ 0.26
MRE11P49959 AC134407.3-201ENST00000624035 2139 ntBASIC16.68■□□□□ 0.26
MRE11P49959 AC004623.1-201ENST00000624592 2127 ntBASIC16.68■□□□□ 0.26
MRE11P49959 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 PLA2G6-202ENST00000335539 3060 ntTSL 5 BASIC16.68■□□□□ 0.26
MRE11P49959 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.68■□□□□ 0.26
MRE11P49959 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC16.68■□□□□ 0.26
MRE11P49959 BTNL8-201ENST00000231229 2229 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MRE11P49959 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC16.68■□□□□ 0.26
MRE11P49959 TRPC7-201ENST00000352189 2241 ntTSL 5 BASIC16.68■□□□□ 0.26
MRE11P49959 C2-209ENST00000452323 1999 ntTSL 2 BASIC16.68■□□□□ 0.26
MRE11P49959 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.67■□□□□ 0.26
MRE11P49959 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
MRE11P49959 TNRC18P1-201ENST00000502875 3650 ntBASIC16.67■□□□□ 0.26
MRE11P49959 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC16.67■□□□□ 0.26
MRE11P49959 AL928654.5-201ENST00000624831 2501 ntBASIC16.67■□□□□ 0.26
MRE11P49959 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
MRE11P49959 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.67■□□□□ 0.26
MRE11P49959 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
MRE11P49959 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.67■□□□□ 0.26
MRE11P49959 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.67■□□□□ 0.26
MRE11P49959 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
MRE11P49959 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.67■□□□□ 0.26
MRE11P49959 ELK1P1-201ENST00000485699 580 ntBASIC16.67■□□□□ 0.26
MRE11P49959 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.67■□□□□ 0.26
MRE11P49959 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.67■□□□□ 0.26
MRE11P49959 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.67■□□□□ 0.26
MRE11P49959 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.67■□□□□ 0.26
MRE11P49959 BTNL10-201ENST00000595971 695 ntBASIC16.67■□□□□ 0.26
MRE11P49959 SPCS2P2-201ENST00000603270 608 ntBASIC16.67■□□□□ 0.26
MRE11P49959 CASP16P-204ENST00000635032 809 ntBASIC16.67■□□□□ 0.26
MRE11P49959 TAX1BP1-207ENST00000433216 3174 ntTSL 2 BASIC16.67■□□□□ 0.26
MRE11P49959 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.67■□□□□ 0.26
MRE11P49959 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
MRE11P49959 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MRE11P49959 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
MRE11P49959 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC16.67■□□□□ 0.26
MRE11P49959 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
MRE11P49959 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms