Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AC152010.1-201ENST00000415779 2006 ntBASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 USP17L6P-201ENST00000382470 1197 ntBASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 PDIA3P2-201ENST00000428073 158 ntBASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 RN7SL277P-201ENST00000481521 288 ntBASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AL512310.5-201ENST00000551999 515 ntBASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 ARL16-210ENST00000574938 751 ntTSL 2 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 RN7SL574P-201ENST00000581512 297 ntBASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AC097724.1-201ENST00000609581 426 ntBASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 LINC01783-202ENST00000614408 828 ntBASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AL353770.1-201ENST00000614915 403 ntBASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 BX284668.2-205ENST00000619677 828 ntBASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.16□□□□□ -0.14
TRIM39Q9HCM9 TUBB8P4-201ENST00000511806 1324 ntBASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 AC007952.5-201ENST00000572818 1486 ntBASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 BANF1P3-201ENST00000412556 261 ntBASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 SUPT4H1P2-201ENST00000501248 353 ntBASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 AC008723.1-201ENST00000506922 207 ntBASIC14.15□□□□□ -0.14
TRIM39Q9HCM9 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms