Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RFC3P40938 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RFC3P40938 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.11□□□□□ -0.31
RFC3P40938 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RFC3P40938 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
RFC3P40938 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
RFC3P40938 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 AC067750.1-201ENST00000608826 6545 ntBASIC13.1□□□□□ -0.31
RFC3P40938 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 KRT17P5-201ENST00000332088 839 ntBASIC13.1□□□□□ -0.31
RFC3P40938 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 AL512430.1-201ENST00000392575 860 ntBASIC13.1□□□□□ -0.31
RFC3P40938 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 RPS9P1-201ENST00000419943 583 ntBASIC13.1□□□□□ -0.31
RFC3P40938 AL807761.2-201ENST00000422849 729 ntBASIC13.1□□□□□ -0.31
RFC3P40938 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.1□□□□□ -0.31
RFC3P40938 AC092580.1-201ENST00000433998 658 ntBASIC13.1□□□□□ -0.31
RFC3P40938 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.1□□□□□ -0.31
RFC3P40938 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.1□□□□□ -0.31
RFC3P40938 NOC2LP1-201ENST00000450578 752 ntBASIC13.1□□□□□ -0.31
RFC3P40938 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC13.1□□□□□ -0.31
RFC3P40938 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC13.1□□□□□ -0.31
RFC3P40938 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 SNX1-214ENST00000625244 324 ntTSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
RFC3P40938 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RFC3P40938 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RFC3P40938 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC13.09□□□□□ -0.31
RFC3P40938 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.09□□□□□ -0.31
RFC3P40938 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC13.09□□□□□ -0.31
RFC3P40938 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.09□□□□□ -0.31
RFC3P40938 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
RFC3P40938 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC13.09□□□□□ -0.31
RFC3P40938 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
RFC3P40938 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
RFC3P40938 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC13.09□□□□□ -0.31
RFC3P40938 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC13.09□□□□□ -0.31
RFC3P40938 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC13.09□□□□□ -0.31
RFC3P40938 SORD2P-201ENST00000558556 1069 ntBASIC13.09□□□□□ -0.31
RFC3P40938 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 AC005586.2-201ENST00000563946 837 ntBASIC13.09□□□□□ -0.31
RFC3P40938 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC13.09□□□□□ -0.31
RFC3P40938 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC13.09□□□□□ -0.31
RFC3P40938 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.09□□□□□ -0.31
RFC3P40938 MIR4522-201ENST00000584932 87 ntBASIC13.09□□□□□ -0.31
RFC3P40938 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RFC3P40938 AC021016.3-201ENST00000608367 477 ntBASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms