Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.52■□□□□ 0.23
BRCA1P38398 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
BRCA1P38398 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
BRCA1P38398 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.52■□□□□ 0.23
BRCA1P38398 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
BRCA1P38398 NR1I3-210ENST00000437437 973 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
BRCA1P38398 SVILP1-203ENST00000450581 486 ntTSL 3 BASIC16.52■□□□□ 0.23
BRCA1P38398 DERL1-204ENST00000519018 575 ntTSL 4 BASIC16.52■□□□□ 0.23
BRCA1P38398 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC16.52■□□□□ 0.23
BRCA1P38398 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC16.52■□□□□ 0.23
BRCA1P38398 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC16.52■□□□□ 0.23
BRCA1P38398 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
BRCA1P38398 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
BRCA1P38398 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
BRCA1P38398 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
BRCA1P38398 IMPDH1P5-201ENST00000439688 1540 ntBASIC16.52■□□□□ 0.23
BRCA1P38398 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
BRCA1P38398 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
BRCA1P38398 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
BRCA1P38398 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.52■□□□□ 0.23
BRCA1P38398 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC16.51■□□□□ 0.23
BRCA1P38398 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 BTN2A2-204ENST00000432533 1570 ntTSL 2 BASIC16.51■□□□□ 0.23
BRCA1P38398 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC16.51■□□□□ 0.23
BRCA1P38398 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.51■□□□□ 0.23
BRCA1P38398 AC008894.3-201ENST00000624324 3103 ntBASIC16.51■□□□□ 0.23
BRCA1P38398 CICP14-201ENST00000629111 2732 ntBASIC16.51■□□□□ 0.23
BRCA1P38398 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.51■□□□□ 0.23
BRCA1P38398 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.51■□□□□ 0.23
BRCA1P38398 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
BRCA1P38398 PGAM1P10-201ENST00000402426 761 ntBASIC16.51■□□□□ 0.23
BRCA1P38398 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC16.51■□□□□ 0.23
BRCA1P38398 ATP5G1P7-201ENST00000444398 400 ntBASIC16.51■□□□□ 0.23
BRCA1P38398 VEGFA-224ENST00000523873 784 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
BRCA1P38398 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC16.51■□□□□ 0.23
BRCA1P38398 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
BRCA1P38398 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
BRCA1P38398 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC16.51■□□□□ 0.23
BRCA1P38398 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
BRCA1P38398 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 TBC1D3P1-201ENST00000590047 1693 ntBASIC16.51■□□□□ 0.23
BRCA1P38398 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.51■□□□□ 0.23
BRCA1P38398 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
BRCA1P38398 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
BRCA1P38398 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
BRCA1P38398 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
BRCA1P38398 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
BRCA1P38398 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 TFAM-201ENST00000373895 973 ntTSL 2 BASIC16.5■□□□□ 0.23
BRCA1P38398 AL121949.1-201ENST00000402043 968 ntBASIC16.5■□□□□ 0.23
BRCA1P38398 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC16.5■□□□□ 0.23
BRCA1P38398 AC025822.1-201ENST00000455525 633 ntTSL 2 BASIC16.5■□□□□ 0.23
BRCA1P38398 AC012100.1-201ENST00000470304 282 ntBASIC16.5■□□□□ 0.23
BRCA1P38398 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCA1P38398 AP003062.1-201ENST00000528497 762 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCA1P38398 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCA1P38398 HERC2P5-202ENST00000564458 1164 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 HERC2P8-203ENST00000564795 1164 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCA1P38398 PSME3-213ENST00000592169 826 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCA1P38398 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
BRCA1P38398 USP8-219ENST00000625664 1568 ntTSL 5 BASIC16.5■□□□□ 0.23
BRCA1P38398 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 AC008038.1-201ENST00000634247 1314 ntBASIC16.5■□□□□ 0.23
BRCA1P38398 AC007389.3-201ENST00000420724 1656 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCA1P38398 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 SIGLEC17P-204ENST00000618545 1517 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.5■□□□□ 0.23
BRCA1P38398 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
BRCA1P38398 RNASE8-201ENST00000308227 634 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
BRCA1P38398 OR2T33-201ENST00000318021 1066 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
BRCA1P38398 CREB3L4-203ENST00000368601 950 ntTSL 2 BASIC16.5■□□□□ 0.23
BRCA1P38398 RPE-208ENST00000436630 1128 ntTSL 2 BASIC16.5■□□□□ 0.23
BRCA1P38398 AC116347.1-201ENST00000442824 720 ntBASIC16.5■□□□□ 0.23
BRCA1P38398 AL391822.1-201ENST00000452580 562 ntBASIC16.5■□□□□ 0.23
BRCA1P38398 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC16.5■□□□□ 0.23
BRCA1P38398 LINC02507-201ENST00000509370 1028 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCA1P38398 IGHV7-56-201ENST00000518372 351 ntBASIC16.5■□□□□ 0.23
BRCA1P38398 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCA1P38398 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC16.5■□□□□ 0.23
BRCA1P38398 AC112694.1-202ENST00000540985 943 ntBASIC16.5■□□□□ 0.23
BRCA1P38398 AC025048.4-201ENST00000589740 699 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCA1P38398 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
BRCA1P38398 AC040160.2-201ENST00000623816 1675 ntBASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms