Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 NEK11-213ENST00000511262 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 AP000437.1-201ENST00000624057 2085 ntBASIC14.13□□□□□ -0.15
COL6A3P12111 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
COL6A3P12111 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
COL6A3P12111 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
COL6A3P12111 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 TMIGD1-201ENST00000328886 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 GPR141-201ENST00000334425 918 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
COL6A3P12111 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 DNPEP-205ENST00000373972 1578 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A3P12111 HNRNPA1P34-201ENST00000391992 950 ntBASIC14.13□□□□□ -0.15
COL6A3P12111 AL133517.1-201ENST00000413412 748 ntBASIC14.13□□□□□ -0.15
COL6A3P12111 AL138902.1-201ENST00000437965 856 ntTSL 3 BASIC14.13□□□□□ -0.15
COL6A3P12111 CLDND1-223ENST00000511081 642 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A3P12111 RN7SL162P-201ENST00000579233 292 ntBASIC14.13□□□□□ -0.15
COL6A3P12111 MIR4326-201ENST00000582203 59 ntBASIC14.13□□□□□ -0.15
COL6A3P12111 AL136084.3-201ENST00000605631 439 ntBASIC14.13□□□□□ -0.15
COL6A3P12111 Metazoa_SRP.163-201ENST00000611926 277 ntBASIC14.13□□□□□ -0.15
COL6A3P12111 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A3P12111 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 HP-203ENST00000357763 1482 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A3P12111 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A3P12111 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 MYL7-201ENST00000223364 612 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 S100B-202ENST00000367071 971 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 PQLC1P1-201ENST00000434950 429 ntBASIC14.13□□□□□ -0.15
COL6A3P12111 RAB34-211ENST00000450529 1184 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A3P12111 AL355987.2-201ENST00000471502 561 ntTSL 4 BASIC14.13□□□□□ -0.15
COL6A3P12111 AC127496.5-202ENST00000572036 869 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A3P12111 TRMT112P6-201ENST00000599234 372 ntBASIC14.13□□□□□ -0.15
COL6A3P12111 AL365181.3-201ENST00000605886 3222 ntBASIC14.13□□□□□ -0.15
COL6A3P12111 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A3P12111 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A3P12111 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 BSDC1-209ENST00000526031 1361 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A3P12111 AC099689.1-201ENST00000624383 1302 ntBASIC14.12□□□□□ -0.15
COL6A3P12111 POLR1C-202ENST00000372344 1119 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A3P12111 AC041040.1-201ENST00000425197 460 ntBASIC14.12□□□□□ -0.15
COL6A3P12111 ZNF674-AS1-202ENST00000609887 672 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A3P12111 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A3P12111 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A3P12111 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 PRSS3-203ENST00000379405 834 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 TMEM176A-201ENST00000004103 1261 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 LINC00929-202ENST00000556159 1169 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 LINC00959-202ENST00000637128 826 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL6A3P12111 ERGIC3-220ENST00000640748 832 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A3P12111 ABHD11-AS1-202ENST00000641969 358 ntBASIC14.12□□□□□ -0.15
COL6A3P12111 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A3P12111 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A3P12111 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A3P12111 C3orf36-201ENST00000408895 1668 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
COL6A3P12111 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A3P12111 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A3P12111 CDKN2AIPNLP2-201ENST00000274516 352 ntBASIC14.12□□□□□ -0.15
COL6A3P12111 MIR1307-201ENST00000408840 149 ntBASIC14.12□□□□□ -0.15
COL6A3P12111 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A3P12111 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC14.12□□□□□ -0.15
COL6A3P12111 PSMD7-205ENST00000568615 931 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A3P12111 SNORD55-201ENST00000581525 80 ntBASIC14.12□□□□□ -0.15
COL6A3P12111 AP001120.3-201ENST00000585729 489 ntBASIC14.12□□□□□ -0.15
COL6A3P12111 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 SERPIND1-202ENST00000406799 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
COL6A3P12111 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 POM121L14P-201ENST00000406100 1558 ntBASIC14.11□□□□□ -0.15
COL6A3P12111 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 HIST1H2BN-201ENST00000396980 432 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 SPTY2D1-AS1-202ENST00000511927 573 ntAPPRIS ALT2 TSL 4 BASIC14.11□□□□□ -0.15
COL6A3P12111 TMEM253-206ENST00000556585 1236 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 AC020663.2-201ENST00000592465 720 ntTSL 3 BASIC14.11□□□□□ -0.15
COL6A3P12111 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 GPHB5-202ENST00000621500 543 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
COL6A3P12111 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 SCARB2-202ENST00000452464 1495 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A3P12111 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 CCDC89-201ENST00000316398 1412 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
COL6A3P12111 KATNAL1-202ENST00000380617 1634 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
COL6A3P12111 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms