Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL20A1Q9P218 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC15.9■□□□□ 0.14
COL20A1Q9P218 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.9■□□□□ 0.14
COL20A1Q9P218 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL20A1Q9P218 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL20A1Q9P218 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 PES1P2-201ENST00000449745 1735 ntBASIC15.89■□□□□ 0.13
COL20A1Q9P218 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 RN7SL396P-201ENST00000471086 295 ntBASIC15.89■□□□□ 0.13
COL20A1Q9P218 RN7SL23P-201ENST00000484055 275 ntBASIC15.89■□□□□ 0.13
COL20A1Q9P218 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 OR2A1-AS1-210ENST00000496968 531 ntBASIC15.89■□□□□ 0.13
COL20A1Q9P218 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 AC006158.1-201ENST00000610661 249 ntBASIC15.89■□□□□ 0.13
COL20A1Q9P218 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.89■□□□□ 0.13
COL20A1Q9P218 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL20A1Q9P218 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 ACTG1P19-201ENST00000418987 1116 ntBASIC15.88■□□□□ 0.13
COL20A1Q9P218 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 AC005089.1-201ENST00000619486 2241 ntBASIC15.88■□□□□ 0.13
COL20A1Q9P218 AC093462.1-201ENST00000621167 1683 ntBASIC15.88■□□□□ 0.13
COL20A1Q9P218 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL20A1Q9P218 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC15.88■□□□□ 0.13
COL20A1Q9P218 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
COL20A1Q9P218 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL20A1Q9P218 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL20A1Q9P218 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL20A1Q9P218 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms