Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
TRIM39Q9HCM9 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 TET3-201ENST00000305799 5174 ntTSL 5 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 TPI1-206ENST00000488464 791 ntTSL 5 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 AC093752.3-201ENST00000567343 901 ntBASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
TRIM39Q9HCM9 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 AC015909.3-201ENST00000572855 1794 ntBASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 MBP-201ENST00000354542 575 ntTSL 2 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ELK2AP-201ENST00000392510 1007 ntBASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 AC073150.1-201ENST00000450406 1084 ntBASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 DUX4L50-201ENST00000455245 715 ntBASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 RN7SL258P-201ENST00000478664 300 ntBASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 NUP210P1-202ENST00000504322 710 ntBASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 AC245884.6-201ENST00000515672 1067 ntBASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 AC020922.3-201ENST00000595064 547 ntBASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 HPN-206ENST00000597419 1212 ntTSL 5 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 AC091812.3-201ENST00000621362 345 ntBASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRIM39Q9HCM9 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms