Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC00115-201ENST00000473798 1317 ntBASIC13.8□□□□□ -0.2
FOXA1P55317 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
FOXA1P55317 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA1P55317 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA1P55317 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA1P55317 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
FOXA1P55317 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 AC009474.1-201ENST00000455096 1565 ntBASIC13.79□□□□□ -0.2
FOXA1P55317 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC13.79□□□□□ -0.2
FOXA1P55317 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
FOXA1P55317 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
FOXA1P55317 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 LINC00638-201ENST00000555578 2518 ntBASIC13.79□□□□□ -0.2
FOXA1P55317 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
FOXA1P55317 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC13.79□□□□□ -0.2
FOXA1P55317 AC012441.2-201ENST00000444843 739 ntBASIC13.79□□□□□ -0.2
FOXA1P55317 KLF2P4-201ENST00000451959 1225 ntBASIC13.79□□□□□ -0.2
FOXA1P55317 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.79□□□□□ -0.2
FOXA1P55317 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 MIR4741-201ENST00000579822 90 ntBASIC13.79□□□□□ -0.2
FOXA1P55317 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.79□□□□□ -0.2
FOXA1P55317 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.79□□□□□ -0.2
FOXA1P55317 AC133540.1-201ENST00000620845 1019 ntBASIC13.79□□□□□ -0.2
FOXA1P55317 CR392039.2-201ENST00000623182 509 ntBASIC13.79□□□□□ -0.2
FOXA1P55317 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
FOXA1P55317 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC13.79□□□□□ -0.2
FOXA1P55317 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
FOXA1P55317 Z82170.1-201ENST00000625081 3192 ntBASIC13.79□□□□□ -0.2
FOXA1P55317 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA1P55317 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC13.78□□□□□ -0.2
FOXA1P55317 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
FOXA1P55317 AC103592.1-201ENST00000394513 664 ntBASIC13.78□□□□□ -0.2
FOXA1P55317 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.78□□□□□ -0.2
FOXA1P55317 AL354877.1-201ENST00000424412 413 ntBASIC13.78□□□□□ -0.2
FOXA1P55317 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 KRT17P7-201ENST00000451704 1104 ntBASIC13.78□□□□□ -0.2
FOXA1P55317 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA1P55317 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.78□□□□□ -0.2
FOXA1P55317 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA1P55317 SNX29P1-201ENST00000548357 1007 ntBASIC13.78□□□□□ -0.2
FOXA1P55317 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA1P55317 MAX-218ENST00000557746 571 ntTSL 4 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms