Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CHCHD2P2-201ENST00000503744 321 ntBASIC14.99□□□□□ -0.01
BDNFP23560 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC14.99□□□□□ -0.01
BDNFP23560 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC14.99□□□□□ -0.01
BDNFP23560 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC14.99□□□□□ -0.01
BDNFP23560 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC14.99□□□□□ -0.01
BDNFP23560 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.99□□□□□ -0.01
BDNFP23560 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC14.99□□□□□ -0.01
BDNFP23560 WDR7-208ENST00000589935 544 ntTSL 4 BASIC14.99□□□□□ -0.01
BDNFP23560 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC14.99□□□□□ -0.01
BDNFP23560 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 RPL13AP3-202ENST00000494676 1473 ntBASIC14.99□□□□□ -0.01
BDNFP23560 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.99□□□□□ -0.01
BDNFP23560 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.99□□□□□ -0.01
BDNFP23560 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.99□□□□□ -0.01
BDNFP23560 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
BDNFP23560 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
BDNFP23560 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.98□□□□□ -0.01
BDNFP23560 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC14.98□□□□□ -0.01
BDNFP23560 AC016397.2-201ENST00000624848 1985 ntBASIC14.98□□□□□ -0.01
BDNFP23560 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 AL590824.1-201ENST00000403828 1349 ntBASIC14.98□□□□□ -0.01
BDNFP23560 SHMT1P1-201ENST00000419974 1312 ntBASIC14.98□□□□□ -0.01
BDNFP23560 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
BDNFP23560 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.98□□□□□ -0.01
BDNFP23560 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 SOD2-202ENST00000367054 815 ntTSL 2 BASIC14.98□□□□□ -0.01
BDNFP23560 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC14.98□□□□□ -0.01
BDNFP23560 HLA-DPB2-205ENST00000435074 1188 ntBASIC14.98□□□□□ -0.01
BDNFP23560 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.98□□□□□ -0.01
BDNFP23560 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 MRPL22P1-201ENST00000505398 616 ntBASIC14.98□□□□□ -0.01
BDNFP23560 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.98□□□□□ -0.01
BDNFP23560 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC14.98□□□□□ -0.01
BDNFP23560 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
BDNFP23560 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC14.98□□□□□ -0.01
BDNFP23560 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
BDNFP23560 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC14.98□□□□□ -0.01
BDNFP23560 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC14.98□□□□□ -0.01
BDNFP23560 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
BDNFP23560 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
BDNFP23560 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.97□□□□□ -0.01
BDNFP23560 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
BDNFP23560 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 BX679664.3-201ENST00000414070 555 ntBASIC14.97□□□□□ -0.01
BDNFP23560 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.97□□□□□ -0.01
BDNFP23560 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 CHCHD2P9-201ENST00000461726 456 ntBASIC14.97□□□□□ -0.01
BDNFP23560 AC113935.1-201ENST00000471722 555 ntBASIC14.97□□□□□ -0.01
BDNFP23560 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 POLD4-208ENST00000532830 904 ntTSL 3 BASIC14.97□□□□□ -0.01
BDNFP23560 MIR3147-201ENST00000577811 66 ntBASIC14.97□□□□□ -0.01
BDNFP23560 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC14.97□□□□□ -0.01
BDNFP23560 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC14.97□□□□□ -0.01
BDNFP23560 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC14.97□□□□□ -0.01
BDNFP23560 AC073352.2-201ENST00000609385 439 ntBASIC14.97□□□□□ -0.01
BDNFP23560 AC242376.2-201ENST00000619355 883 ntBASIC14.97□□□□□ -0.01
BDNFP23560 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
BDNFP23560 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms