Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MAK16-201ENST00000360128 3991 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 KDM2B-219ENST00000611216 3434 ntTSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 NUF2-201ENST00000271452 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 AL391845.2-201ENST00000443930 1954 ntTSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 NDRG4-204ENST00000394282 3626 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
CXCL1P09341 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CXCL1P09341 GLB1L-203ENST00000409640 2042 ntTSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 YTHDF2-208ENST00000541996 2719 ntTSL 2 BASIC11.08□□□□□ -0.64
CXCL1P09341 AC008764.8-201ENST00000623966 2717 ntBASIC11.08□□□□□ -0.64
CXCL1P09341 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 CCDC187-204ENST00000624277 3918 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 NR3C1-204ENST00000394466 3245 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 LGALS3BP-201ENST00000262776 2405 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 TP53I11-203ENST00000395648 3381 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 MVP-202ENST00000395353 2925 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 DRAM1-201ENST00000258534 3519 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 TUT1-202ENST00000308436 2826 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 CICP18-201ENST00000406017 2812 ntBASIC11.07□□□□□ -0.64
CXCL1P09341 AC015688.4-201ENST00000580780 1647 ntBASIC11.07□□□□□ -0.64
CXCL1P09341 BCDIN3D-AS1-201ENST00000548872 3078 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 BOLL-201ENST00000282278 2742 ntTSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 IQSEC1-204ENST00000613206 3582 ntTSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC11.07□□□□□ -0.64
CXCL1P09341 HLA-K-203ENST00000430151 1046 ntBASIC11.07□□□□□ -0.64
CXCL1P09341 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC11.07□□□□□ -0.64
CXCL1P09341 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC11.07□□□□□ -0.64
CXCL1P09341 AP000344.2-201ENST00000512987 629 ntBASIC11.07□□□□□ -0.64
CXCL1P09341 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC11.07□□□□□ -0.64
CXCL1P09341 SLC25A1P1-201ENST00000528351 927 ntBASIC11.07□□□□□ -0.64
CXCL1P09341 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC11.07□□□□□ -0.64
CXCL1P09341 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC11.07□□□□□ -0.64
CXCL1P09341 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC11.07□□□□□ -0.64
CXCL1P09341 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
CXCL1P09341 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 MIR6080-201ENST00000617359 66 ntBASIC11.07□□□□□ -0.64
CXCL1P09341 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 PNMA3-203ENST00000619635 3627 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 TRPC6-201ENST00000344327 4612 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
CXCL1P09341 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 ARHGEF4-212ENST00000525839 3828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 TMEM86A-201ENST00000280734 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 CHIAP2-201ENST00000369743 2829 ntTSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 KRT78-202ENST00000359499 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 AC105402.3-202ENST00000446781 2592 ntTSL 5 BASIC11.07□□□□□ -0.64
CXCL1P09341 IGHG2-202ENST00000641095 2594 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
CXCL1P09341 LITAF-221ENST00000622633 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC11.07□□□□□ -0.64
CXCL1P09341 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CXCL1P09341 AC108024.1-201ENST00000626286 1721 ntBASIC11.06□□□□□ -0.64
CXCL1P09341 STAT3-202ENST00000389272 2615 ntTSL 2 BASIC11.06□□□□□ -0.64
CXCL1P09341 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
CXCL1P09341 UBTF-206ENST00000527034 3010 ntTSL 5 BASIC11.06□□□□□ -0.64
CXCL1P09341 CCDC3-202ENST00000378839 3180 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
CXCL1P09341 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
CXCL1P09341 PISD-202ENST00000382151 2669 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
CXCL1P09341 GNB5-203ENST00000396335 2678 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 PDP1-202ENST00000396200 4358 ntAPPRIS ALT1 TSL 4 BASIC11.06□□□□□ -0.64
CXCL1P09341 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
CXCL1P09341 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms