Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 GMFG-209ENST00000600322 622 ntTSL 5 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 AL591471.1-201ENST00000621855 229 ntBASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 AC009084.3-201ENST00000623356 437 ntBASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 HLA-DQB1-202ENST00000399079 1501 ntBASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
CCDC3Q9BQI4 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 AC114501.1-201ENST00000445949 172 ntBASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 AC018463.1-201ENST00000456674 917 ntBASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 POLD4-208ENST00000532830 904 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 KRT8P1-201ENST00000557533 1207 ntBASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 AC107464.3-201ENST00000609172 737 ntBASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 AC084781.1-201ENST00000613737 656 ntBASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC3Q9BQI4 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AC025271.4-201ENST00000621477 1726 ntBASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 CYP51A1P3-201ENST00000400072 1428 ntBASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 CTBP2P4-201ENST00000513884 920 ntBASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AP003398.1-201ENST00000531124 318 ntBASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms