Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 ACKR1-201ENST00000368121 1240 ntBASIC11.63□□□□□ -0.55
RAB40CQ96S21 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 MIR770-201ENST00000390219 98 ntBASIC11.63□□□□□ -0.55
RAB40CQ96S21 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 PTPA-215ENST00000432124 567 ntTSL 4 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 AC245100.3-201ENST00000441281 285 ntBASIC11.63□□□□□ -0.55
RAB40CQ96S21 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 AQP6-203ENST00000551733 849 ntTSL 3 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 AC008738.7-201ENST00000609744 511 ntBASIC11.63□□□□□ -0.55
RAB40CQ96S21 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 AL139385.1-201ENST00000611744 3272 ntBASIC11.63□□□□□ -0.55
RAB40CQ96S21 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 USP39-207ENST00000450066 2086 ntTSL 2 BASIC11.63□□□□□ -0.55
RAB40CQ96S21 AC026271.4-201ENST00000578214 1833 ntBASIC11.63□□□□□ -0.55
RAB40CQ96S21 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
RAB40CQ96S21 USO1-201ENST00000264904 4135 ntTSL 2 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 CLUHP2-201ENST00000426660 1303 ntBASIC11.62□□□□□ -0.55
RAB40CQ96S21 FKBP4P6-201ENST00000457486 1332 ntBASIC11.62□□□□□ -0.55
RAB40CQ96S21 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 VDR-201ENST00000229022 4773 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 METTL26-204ENST00000397665 558 ntTSL 2 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 FTLP10-202ENST00000505798 471 ntBASIC11.62□□□□□ -0.55
RAB40CQ96S21 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 AC068587.3-201ENST00000526613 355 ntBASIC11.62□□□□□ -0.55
RAB40CQ96S21 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 JPT2-214ENST00000569765 782 ntTSL 2 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 AC124283.3-201ENST00000570869 594 ntBASIC11.62□□□□□ -0.55
RAB40CQ96S21 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC11.62□□□□□ -0.55
RAB40CQ96S21 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
RAB40CQ96S21 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC11.62□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms