Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.22□□□□□ -0.29
RNF4P78317 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.22□□□□□ -0.29
RNF4P78317 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.22□□□□□ -0.29
RNF4P78317 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
RNF4P78317 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
RNF4P78317 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
RNF4P78317 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC13.22□□□□□ -0.29
RNF4P78317 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC13.22□□□□□ -0.29
RNF4P78317 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
RNF4P78317 AC103592.1-201ENST00000394513 664 ntBASIC13.22□□□□□ -0.29
RNF4P78317 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC13.22□□□□□ -0.29
RNF4P78317 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC13.22□□□□□ -0.29
RNF4P78317 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC13.22□□□□□ -0.29
RNF4P78317 CD164-210ENST00000512821 964 ntTSL 2 BASIC13.22□□□□□ -0.29
RNF4P78317 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC13.22□□□□□ -0.29
RNF4P78317 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC13.22□□□□□ -0.29
RNF4P78317 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.22□□□□□ -0.29
RNF4P78317 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.22□□□□□ -0.29
RNF4P78317 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
RNF4P78317 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
RNF4P78317 TBC1D3J-201ENST00000620719 1426 ntBASIC13.22□□□□□ -0.29
RNF4P78317 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RNF4P78317 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
RNF4P78317 AC118758.2-201ENST00000614242 2813 ntBASIC13.21□□□□□ -0.29
RNF4P78317 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
RNF4P78317 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.21□□□□□ -0.29
RNF4P78317 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
RNF4P78317 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.21□□□□□ -0.29
RNF4P78317 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.21□□□□□ -0.29
RNF4P78317 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
RNF4P78317 OR2K2-202ENST00000374428 1038 ntBASIC13.21□□□□□ -0.29
RNF4P78317 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC13.21□□□□□ -0.29
RNF4P78317 OR8T1P-201ENST00000421347 918 ntBASIC13.21□□□□□ -0.29
RNF4P78317 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.21□□□□□ -0.29
RNF4P78317 AC114947.1-202ENST00000514136 344 ntBASIC13.21□□□□□ -0.29
RNF4P78317 AC134698.3-201ENST00000523880 214 ntBASIC13.21□□□□□ -0.29
RNF4P78317 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC13.21□□□□□ -0.29
RNF4P78317 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
RNF4P78317 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
RNF4P78317 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC13.21□□□□□ -0.29
RNF4P78317 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC13.21□□□□□ -0.29
RNF4P78317 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC13.21□□□□□ -0.29
RNF4P78317 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC13.21□□□□□ -0.29
RNF4P78317 NIFKP4-201ENST00000567275 1192 ntBASIC13.21□□□□□ -0.29
RNF4P78317 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC13.21□□□□□ -0.29
RNF4P78317 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC13.21□□□□□ -0.29
RNF4P78317 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms