Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
LIG3P49916 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
LIG3P49916 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 DNM1P41-201ENST00000623634 3350 ntBASIC15.14■□□□□ 0.01
LIG3P49916 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC15.14■□□□□ 0.01
LIG3P49916 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
LIG3P49916 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC15.14■□□□□ 0.01
LIG3P49916 INE2-201ENST00000630399 1874 ntBASIC15.14■□□□□ 0.01
LIG3P49916 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.14■□□□□ 0.01
LIG3P49916 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 AP001972.5-201ENST00000624624 2338 ntBASIC15.14■□□□□ 0.01
LIG3P49916 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIG3P49916 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC15.13■□□□□ 0.01
LIG3P49916 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
LIG3P49916 TRIM80P-201ENST00000455685 2848 ntBASIC15.13■□□□□ 0.01
LIG3P49916 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.13■□□□□ 0.01
LIG3P49916 TP73-207ENST00000378290 1831 ntTSL 2 BASIC15.13■□□□□ 0.01
LIG3P49916 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.13■□□□□ 0.01
LIG3P49916 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC15.13■□□□□ 0.01
LIG3P49916 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC15.13■□□□□ 0.01
LIG3P49916 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.13■□□□□ 0.01
LIG3P49916 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
LIG3P49916 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC15.13■□□□□ 0.01
LIG3P49916 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.13■□□□□ 0.01
LIG3P49916 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.13■□□□□ 0.01
LIG3P49916 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
LIG3P49916 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.13■□□□□ 0.01
LIG3P49916 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.13■□□□□ 0.01
LIG3P49916 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.13■□□□□ 0.01
LIG3P49916 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 AC026434.2-201ENST00000506094 1078 ntBASIC15.13■□□□□ 0.01
LIG3P49916 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.13■□□□□ 0.01
LIG3P49916 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LIG3P49916 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
LIG3P49916 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC15.13■□□□□ 0.01
LIG3P49916 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
LIG3P49916 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIG3P49916 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LIG3P49916 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.12■□□□□ 0.01
LIG3P49916 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC15.12■□□□□ 0.01
LIG3P49916 AL354989.2-201ENST00000435838 1540 ntBASIC15.12■□□□□ 0.01
LIG3P49916 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC15.12■□□□□ 0.01
LIG3P49916 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
LIG3P49916 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.12■□□□□ 0.01
LIG3P49916 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC15.12■□□□□ 0.01
LIG3P49916 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
LIG3P49916 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 POM121L8P-201ENST00000417732 1281 ntBASIC15.12■□□□□ 0.01
LIG3P49916 POM121L9P-203ENST00000441984 1285 ntBASIC15.12■□□□□ 0.01
LIG3P49916 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
LIG3P49916 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.12■□□□□ 0.01
LIG3P49916 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.12■□□□□ 0.01
LIG3P49916 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.12■□□□□ 0.01
LIG3P49916 AC004466.1-201ENST00000599515 1080 ntBASIC15.12■□□□□ 0.01
LIG3P49916 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.12■□□□□ 0.01
LIG3P49916 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIG3P49916 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.12■□□□□ 0.01
LIG3P49916 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms