Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 PSMB8-201ENST00000374881 1351 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 KRT18P45-201ENST00000515347 1333 ntBASIC16.57■□□□□ 0.24
BRCA1P38398 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC16.57■□□□□ 0.24
BRCA1P38398 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC16.56■□□□□ 0.24
BRCA1P38398 LINC01508-201ENST00000425666 1013 ntTSL 3 BASIC16.56■□□□□ 0.24
BRCA1P38398 AL357558.2-201ENST00000431915 425 ntTSL 2 BASIC16.56■□□□□ 0.24
BRCA1P38398 SAA2-206ENST00000530400 323 ntTSL 3 BASIC16.56■□□□□ 0.24
BRCA1P38398 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC16.56■□□□□ 0.24
BRCA1P38398 NSRP1-213ENST00000584423 482 ntTSL 2 BASIC16.56■□□□□ 0.24
BRCA1P38398 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
BRCA1P38398 ZNF674-AS1-202ENST00000609887 672 ntTSL 5 BASIC16.56■□□□□ 0.24
BRCA1P38398 AC112702.1-201ENST00000623712 366 ntBASIC16.56■□□□□ 0.24
BRCA1P38398 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
BRCA1P38398 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
BRCA1P38398 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC16.56■□□□□ 0.24
BRCA1P38398 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 OR2C1-201ENST00000304936 1406 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
BRCA1P38398 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
BRCA1P38398 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 RPS6-201ENST00000315377 863 ntTSL 3 BASIC16.56■□□□□ 0.24
BRCA1P38398 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
BRCA1P38398 SERF2-204ENST00000402131 586 ntTSL 2 BASIC16.56■□□□□ 0.24
BRCA1P38398 FAM126A-201ENST00000409763 616 ntTSL 2 BASIC16.56■□□□□ 0.24
BRCA1P38398 HNRNPA1P59-201ENST00000430583 918 ntBASIC16.56■□□□□ 0.24
BRCA1P38398 RN7SL452P-201ENST00000482923 291 ntBASIC16.56■□□□□ 0.24
BRCA1P38398 WISP1-205ENST00000519433 545 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 MIR3940-201ENST00000579148 102 ntBASIC16.56■□□□□ 0.24
BRCA1P38398 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
BRCA1P38398 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
BRCA1P38398 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.56■□□□□ 0.24
BRCA1P38398 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
BRCA1P38398 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 MKRN7P-201ENST00000433469 1371 ntBASIC16.55■□□□□ 0.24
BRCA1P38398 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 TMEM79-202ENST00000357501 975 ntTSL 3 BASIC16.55■□□□□ 0.24
BRCA1P38398 CR769775.1-203ENST00000399894 579 ntTSL 3 BASIC16.55■□□□□ 0.24
BRCA1P38398 AC079742.1-201ENST00000434951 357 ntTSL 3 BASIC16.55■□□□□ 0.24
BRCA1P38398 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC16.55■□□□□ 0.24
BRCA1P38398 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC16.55■□□□□ 0.24
BRCA1P38398 DSCR9-203ENST00000581640 472 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 AC006262.2-202ENST00000600152 333 ntTSL 2 BASIC16.55■□□□□ 0.24
BRCA1P38398 AC136475.9-201ENST00000605240 497 ntBASIC16.55■□□□□ 0.24
BRCA1P38398 AC009779.7-201ENST00000609031 469 ntBASIC16.55■□□□□ 0.24
BRCA1P38398 AL161937.2-201ENST00000615503 403 ntTSL 2 BASIC16.55■□□□□ 0.24
BRCA1P38398 TNNI2-206ENST00000617947 699 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 RPS9-213ENST00000626547 476 ntTSL 2 BASIC16.55■□□□□ 0.24
BRCA1P38398 AL139220.2-222ENST00000627999 756 ntTSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
BRCA1P38398 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC16.55■□□□□ 0.24
BRCA1P38398 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
BRCA1P38398 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.55■□□□□ 0.24
BRCA1P38398 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 CACNB4-201ENST00000201943 1389 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BRCA1P38398 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC16.55■□□□□ 0.24
BRCA1P38398 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
BRCA1P38398 FAM138A-201ENST00000417324 1187 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 OR52X1P-201ENST00000446117 914 ntBASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms