Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC16.21■□□□□ 0.19
SMARCA1P28370 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
SMARCA1P28370 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC16.21■□□□□ 0.19
SMARCA1P28370 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC16.21■□□□□ 0.19
SMARCA1P28370 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SMARCA1P28370 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.21■□□□□ 0.19
SMARCA1P28370 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC16.21■□□□□ 0.19
SMARCA1P28370 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC16.21■□□□□ 0.19
SMARCA1P28370 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC16.21■□□□□ 0.19
SMARCA1P28370 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC16.21■□□□□ 0.19
SMARCA1P28370 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SMARCA1P28370 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.21■□□□□ 0.19
SMARCA1P28370 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC16.21■□□□□ 0.19
SMARCA1P28370 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC16.21■□□□□ 0.19
SMARCA1P28370 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC16.21■□□□□ 0.19
SMARCA1P28370 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SMARCA1P28370 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SMARCA1P28370 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.21■□□□□ 0.19
SMARCA1P28370 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.21■□□□□ 0.18
SMARCA1P28370 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
SMARCA1P28370 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC16.21■□□□□ 0.18
SMARCA1P28370 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SMARCA1P28370 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.21■□□□□ 0.18
SMARCA1P28370 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SMARCA1P28370 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SMARCA1P28370 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 PDXDC2P-206ENST00000534700 1315 ntBASIC16.2■□□□□ 0.18
SMARCA1P28370 AC074138.1-201ENST00000611182 1303 ntBASIC16.2■□□□□ 0.18
SMARCA1P28370 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC16.2■□□□□ 0.18
SMARCA1P28370 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC16.2■□□□□ 0.18
SMARCA1P28370 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.2■□□□□ 0.18
SMARCA1P28370 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SMARCA1P28370 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SMARCA1P28370 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 SNX18-202ENST00000343017 3140 ntBASIC16.2■□□□□ 0.18
SMARCA1P28370 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.2■□□□□ 0.18
SMARCA1P28370 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC16.2■□□□□ 0.18
SMARCA1P28370 AL512430.1-201ENST00000392575 860 ntBASIC16.2■□□□□ 0.18
SMARCA1P28370 SNORA50C-201ENST00000408535 133 ntBASIC16.2■□□□□ 0.18
SMARCA1P28370 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC16.2■□□□□ 0.18
SMARCA1P28370 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC16.2■□□□□ 0.18
SMARCA1P28370 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.2■□□□□ 0.18
SMARCA1P28370 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC16.2■□□□□ 0.18
SMARCA1P28370 SNORD3B-1-201ENST00000577988 758 ntBASIC16.2■□□□□ 0.18
SMARCA1P28370 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.2■□□□□ 0.18
SMARCA1P28370 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC16.2■□□□□ 0.18
SMARCA1P28370 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC16.2■□□□□ 0.18
SMARCA1P28370 AC007250.1-201ENST00000608934 338 ntBASIC16.2■□□□□ 0.18
SMARCA1P28370 AC084781.1-201ENST00000613737 656 ntBASIC16.2■□□□□ 0.18
SMARCA1P28370 GARS-210ENST00000627489 324 ntTSL 4 BASIC16.2■□□□□ 0.18
SMARCA1P28370 SNORA50.1-201ENST00000628590 135 ntBASIC16.2■□□□□ 0.18
SMARCA1P28370 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.2■□□□□ 0.18
SMARCA1P28370 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SMARCA1P28370 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMARCA1P28370 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SMARCA1P28370 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SMARCA1P28370 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.19■□□□□ 0.18
SMARCA1P28370 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms