Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 USP17L6P-201ENST00000382470 1197 ntBASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 AC112492.5-201ENST00000421897 457 ntBASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 GNRHR2-203ENST00000581100 1187 ntBASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 AL355102.3-201ENST00000554299 1678 ntBASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
AMBRA1Q9C0C7 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AC004899.2-201ENST00000622993 3860 ntBASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 POM121L14P-201ENST00000406100 1558 ntBASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 DDC-214ENST00000622873 1839 ntTSL 3 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AL133338.1-201ENST00000565695 1517 ntBASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 TPM3P8-201ENST00000330554 643 ntBASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AC234783.1-201ENST00000441761 496 ntBASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 PARP8-218ENST00000513738 596 ntTSL 4 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AP003171.2-201ENST00000528208 925 ntBASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AL512343.1-201ENST00000605837 169 ntBASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
AMBRA1Q9C0C7 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms