Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SLC25A15P3-201ENST00000505530 290 ntBASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 VENTXP3-201ENST00000546480 773 ntBASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 TRMT112P3-201ENST00000580149 358 ntBASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 AP005264.6-204ENST00000588436 719 ntBASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 HPX-213ENST00000615166 826 ntTSL 5 BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 MIR6746-201ENST00000620971 63 ntBASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 FUCA1P1-201ENST00000374476 1351 ntBASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NPAS3Q8IXF0 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 PDXDC2P-206ENST00000534700 1315 ntBASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 MTHFR-210ENST00000641407 2387 ntBASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 COX20P1-201ENST00000366529 357 ntBASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 AC006529.1-201ENST00000459978 637 ntBASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 AC090142.2-201ENST00000483263 416 ntBASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 AC022447.6-201ENST00000515522 438 ntBASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 TREHP1-201ENST00000531328 465 ntBASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 AL512310.5-201ENST00000551999 515 ntBASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 THY1-209ENST00000580275 578 ntTSL 3 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 RN7SL455P-201ENST00000580629 282 ntBASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 TP53-221ENST00000615910 1149 ntTSL 5 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 AL009178.2-201ENST00000597278 2719 ntBASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.68□□□□□ -0.06
NPAS3Q8IXF0 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 NME4-203ENST00000397722 1232 ntTSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 RN7SL582P-201ENST00000491078 279 ntBASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 AC008026.2-201ENST00000495438 348 ntBASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms