Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.8□□□□□ -0.04
PTPN9P43378 AC090857.1-201ENST00000527400 390 ntBASIC14.8□□□□□ -0.04
PTPN9P43378 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 RN7SL774P-201ENST00000577467 290 ntBASIC14.8□□□□□ -0.04
PTPN9P43378 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 NDUFV2P1-201ENST00000596415 907 ntBASIC14.8□□□□□ -0.04
PTPN9P43378 HPN-206ENST00000597419 1212 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 MEG3_2.1-201ENST00000611456 105 ntBASIC14.8□□□□□ -0.04
PTPN9P43378 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.8□□□□□ -0.04
PTPN9P43378 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
PTPN9P43378 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC14.8□□□□□ -0.04
PTPN9P43378 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.79□□□□□ -0.04
PTPN9P43378 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 ISCA2P1-201ENST00000425548 448 ntBASIC14.79□□□□□ -0.04
PTPN9P43378 FNTAP2-201ENST00000430308 634 ntBASIC14.79□□□□□ -0.04
PTPN9P43378 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 RERG-205ENST00000537647 935 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
PTPN9P43378 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.79□□□□□ -0.04
PTPN9P43378 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.79□□□□□ -0.04
PTPN9P43378 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 MIR6799-201ENST00000620297 69 ntBASIC14.79□□□□□ -0.04
PTPN9P43378 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
PTPN9P43378 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.79□□□□□ -0.04
PTPN9P43378 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.79□□□□□ -0.04
PTPN9P43378 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN9P43378 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 AC015909.3-201ENST00000572855 1794 ntBASIC14.78□□□□□ -0.04
PTPN9P43378 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN9P43378 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PTPN9P43378 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
PTPN9P43378 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN9P43378 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN9P43378 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
PTPN9P43378 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 CYP46A4P-201ENST00000414953 267 ntBASIC14.78□□□□□ -0.04
PTPN9P43378 DEF8-202ENST00000418391 852 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN9P43378 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN9P43378 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
PTPN9P43378 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.78□□□□□ -0.04
PTPN9P43378 AC099548.2-209ENST00000480264 625 ntBASIC14.78□□□□□ -0.04
PTPN9P43378 HIST2H2BC-201ENST00000498492 580 ntBASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms