Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
USH2AO75445 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 SNHG11-211ENST00000444816 621 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 HNRNPA1P9-201ENST00000450624 950 ntBASIC6.13□□□□□ -1.43
USH2AO75445 SNHG11-214ENST00000457218 880 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 AC145285.1-201ENST00000469929 694 ntBASIC6.13□□□□□ -1.43
USH2AO75445 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 ZNF551-202ENST00000596085 469 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 FOLR1-203ENST00000393679 1331 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC6.13□□□□□ -1.43
USH2AO75445 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 LY6G6F-201ENST00000375832 920 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC6.12□□□□□ -1.43
USH2AO75445 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 AC092100.1-201ENST00000435148 702 ntTSL 3 BASIC6.12□□□□□ -1.43
USH2AO75445 AC016735.1-201ENST00000457457 237 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 AC016304.1-201ENST00000476363 413 ntBASIC6.12□□□□□ -1.43
USH2AO75445 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 AL031058.1-201ENST00000561592 888 ntBASIC6.12□□□□□ -1.43
USH2AO75445 AC093072.1-201ENST00000589196 602 ntTSL 4 BASIC6.12□□□□□ -1.43
USH2AO75445 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC6.12□□□□□ -1.43
USH2AO75445 AC123595.2-201ENST00000607854 549 ntTSL 4 BASIC6.12□□□□□ -1.43
USH2AO75445 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 SERPINB8-209ENST00000636430 1719 ntTSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 OOEP-201ENST00000370359 478 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 GEMIN8-203ENST00000398355 1119 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 TUBB8P9-201ENST00000422534 1276 ntBASIC6.12□□□□□ -1.43
USH2AO75445 TUBB8P10-201ENST00000430210 1279 ntBASIC6.12□□□□□ -1.43
USH2AO75445 RRNAD1-211ENST00000524343 459 ntTSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 HNRNPA1P69-201ENST00000552536 933 ntBASIC6.12□□□□□ -1.43
USH2AO75445 AC116036.2-201ENST00000607592 462 ntBASIC6.12□□□□□ -1.43
USH2AO75445 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 USP39-220ENST00000613444 2161 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 NTF3-201ENST00000331010 1028 ntAPPRIS P3 BASIC6.12□□□□□ -1.43
USH2AO75445 LYG2-201ENST00000333017 862 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 SNU13-204ENST00000402458 462 ntTSL 3 BASIC6.12□□□□□ -1.43
USH2AO75445 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC6.12□□□□□ -1.43
USH2AO75445 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 GULOP-201ENST00000454030 748 ntBASIC6.12□□□□□ -1.43
USH2AO75445 AC091564.7-201ENST00000545572 464 ntTSL 3 BASIC6.12□□□□□ -1.43
USH2AO75445 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC6.12□□□□□ -1.43
USH2AO75445 SNHG21-205ENST00000561107 790 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 KRT8P25-201ENST00000473150 1456 ntBASIC6.12□□□□□ -1.43
USH2AO75445 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms