Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RPAP1Q9BWH6 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPAP1Q9BWH6 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC17.27■□□□□ 0.35
RPAP1Q9BWH6 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 AC140658.4-201ENST00000561990 352 ntBASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 AC007326.1-201ENST00000604539 458 ntBASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 AC025262.2-201ENST00000623975 1056 ntBASIC17.26■□□□□ 0.35
RPAP1Q9BWH6 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 AC114501.1-201ENST00000445949 172 ntBASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPAP1Q9BWH6 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 MARK2P16-201ENST00000605714 1723 ntBASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 AC079781.5-202ENST00000641784 3743 ntBASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms