Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CU639417.6-202ENST00000624872 3241 ntTSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 SEC31A-202ENST00000311785 3909 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 RN7SKP230-201ENST00000365642 335 ntBASIC4.47□□□□□ -1.69
SYNE1Q8NF91 NAGK-204ENST00000443872 878 ntTSL 3 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ST3GAL6-228ENST00000613264 3399 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 HKR1-225ENST00000592168 566 ntTSL 4 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 WSCD2-201ENST00000332082 4710 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 HCN3-201ENST00000368358 3718 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 PNMA8A-201ENST00000313683 3689 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ARHGEF2-203ENST00000361247 4149 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 MIR557-201ENST00000385239 98 ntBASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AL355334.1-201ENST00000417713 215 ntBASIC4.47□□□□□ -1.69
SYNE1Q8NF91 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AC012441.2-201ENST00000444843 739 ntBASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 DCTN1-206ENST00000409868 4202 ntTSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 API5-203ENST00000455725 2257 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AL645937.2-201ENST00000396808 931 ntBASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AC073150.1-201ENST00000450406 1084 ntBASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AC131206.1-201ENST00000538078 1211 ntBASIC4.47□□□□□ -1.69
SYNE1Q8NF91 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 AC006453.1-201ENST00000636037 1257 ntBASIC4.47□□□□□ -1.69
SYNE1Q8NF91 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 FKBP4-201ENST00000001008 3732 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 CYP4F23P-201ENST00000593402 1579 ntBASIC4.47□□□□□ -1.69
SYNE1Q8NF91 EGLN3-205ENST00000547327 2849 ntBASIC4.47□□□□□ -1.69
SYNE1Q8NF91 SSX2IP-201ENST00000342203 5835 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC4.47□□□□□ -1.69
SYNE1Q8NF91 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms