Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
LIG3P49916 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
LIG3P49916 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
LIG3P49916 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC15.18■□□□□ 0.02
LIG3P49916 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 AC006001.1-201ENST00000325130 474 ntBASIC15.18■□□□□ 0.02
LIG3P49916 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.18■□□□□ 0.02
LIG3P49916 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.18■□□□□ 0.02
LIG3P49916 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.18■□□□□ 0.02
LIG3P49916 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.18■□□□□ 0.02
LIG3P49916 ECM1P1-201ENST00000604092 1279 ntBASIC15.18■□□□□ 0.02
LIG3P49916 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.18■□□□□ 0.02
LIG3P49916 ENPP7P14-201ENST00000621765 1040 ntBASIC15.18■□□□□ 0.02
LIG3P49916 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC15.18■□□□□ 0.02
LIG3P49916 MEX3B-202ENST00000558133 4333 ntBASIC15.18■□□□□ 0.02
LIG3P49916 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.18■□□□□ 0.02
LIG3P49916 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
LIG3P49916 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
LIG3P49916 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIG3P49916 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
LIG3P49916 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
LIG3P49916 AP002761.4-201ENST00000565433 3361 ntBASIC15.17■□□□□ 0.02
LIG3P49916 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.17■□□□□ 0.02
LIG3P49916 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.17■□□□□ 0.02
LIG3P49916 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC15.17■□□□□ 0.02
LIG3P49916 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC15.17■□□□□ 0.02
LIG3P49916 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
LIG3P49916 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.17■□□□□ 0.02
LIG3P49916 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
LIG3P49916 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.17■□□□□ 0.02
LIG3P49916 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
LIG3P49916 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.17■□□□□ 0.02
LIG3P49916 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.17■□□□□ 0.02
LIG3P49916 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.17■□□□□ 0.02
LIG3P49916 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.17■□□□□ 0.02
LIG3P49916 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.17■□□□□ 0.02
LIG3P49916 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.17■□□□□ 0.02
LIG3P49916 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.17■□□□□ 0.02
LIG3P49916 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.17■□□□□ 0.02
LIG3P49916 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.17■□□□□ 0.02
LIG3P49916 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.17■□□□□ 0.02
LIG3P49916 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC15.17■□□□□ 0.02
LIG3P49916 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
LIG3P49916 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 MIR193BHG-211ENST00000641433 5365 ntBASIC15.17■□□□□ 0.02
LIG3P49916 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC15.17■□□□□ 0.02
LIG3P49916 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
LIG3P49916 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC15.17■□□□□ 0.02
LIG3P49916 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
LIG3P49916 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIG3P49916 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
LIG3P49916 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
LIG3P49916 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
LIG3P49916 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC15.16■□□□□ 0.02
LIG3P49916 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC15.16■□□□□ 0.02
LIG3P49916 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIG3P49916 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.16■□□□□ 0.02
LIG3P49916 AL445209.1-201ENST00000607269 3491 ntBASIC15.16■□□□□ 0.02
LIG3P49916 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms