Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 AL133338.1-201ENST00000565695 1517 ntBASIC13.54□□□□□ -0.24
SOX3P41225 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
SOX3P41225 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 AC019294.4-201ENST00000561777 2905 ntBASIC13.54□□□□□ -0.24
SOX3P41225 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.54□□□□□ -0.24
SOX3P41225 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SOX3P41225 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
SOX3P41225 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 Z82170.1-201ENST00000625081 3192 ntBASIC13.54□□□□□ -0.24
SOX3P41225 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX3P41225 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
SOX3P41225 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 DPM3-202ENST00000368399 517 ntBASIC13.54□□□□□ -0.24
SOX3P41225 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.54□□□□□ -0.24
SOX3P41225 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 FNTAP2-201ENST00000430308 634 ntBASIC13.54□□□□□ -0.24
SOX3P41225 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.54□□□□□ -0.24
SOX3P41225 EIF4HP1-201ENST00000453115 687 ntBASIC13.54□□□□□ -0.24
SOX3P41225 AC104073.2-201ENST00000453737 312 ntBASIC13.54□□□□□ -0.24
SOX3P41225 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.54□□□□□ -0.24
SOX3P41225 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 AKR7A2P1-201ENST00000460134 915 ntBASIC13.54□□□□□ -0.24
SOX3P41225 RPL18P13-201ENST00000478088 569 ntBASIC13.54□□□□□ -0.24
SOX3P41225 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.54□□□□□ -0.24
SOX3P41225 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.54□□□□□ -0.24
SOX3P41225 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.54□□□□□ -0.24
SOX3P41225 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX3P41225 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC13.54□□□□□ -0.24
SOX3P41225 RN7SL163P-201ENST00000583100 276 ntBASIC13.54□□□□□ -0.24
SOX3P41225 AC005962.1-201ENST00000584100 773 ntBASIC13.54□□□□□ -0.24
SOX3P41225 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.54□□□□□ -0.24
SOX3P41225 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
SOX3P41225 AC009884.2-201ENST00000603110 324 ntBASIC13.54□□□□□ -0.24
SOX3P41225 AC138649.2-201ENST00000615886 705 ntBASIC13.54□□□□□ -0.24
SOX3P41225 Z98259.2-201ENST00000641583 609 ntBASIC13.54□□□□□ -0.24
SOX3P41225 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX3P41225 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
SOX3P41225 AC138028.6-201ENST00000616106 1482 ntBASIC13.54□□□□□ -0.24
SOX3P41225 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX3P41225 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.54□□□□□ -0.24
SOX3P41225 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 KRT8P24-201ENST00000560290 1559 ntBASIC13.54□□□□□ -0.24
SOX3P41225 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.54□□□□□ -0.24
SOX3P41225 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SOX3P41225 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
SOX3P41225 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX3P41225 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX3P41225 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.53□□□□□ -0.24
SOX3P41225 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 CICP16-201ENST00000502609 2813 ntBASIC13.53□□□□□ -0.24
SOX3P41225 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.53□□□□□ -0.24
SOX3P41225 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms