Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 BRD9-213ENST00000495794 4865 ntTSL 214.3□□□□□ -0.124e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-204ENST00000594597 567 ntTSL 414.07□□□□□ -0.164e-6■□□□□ 8.3
YBX3P16989 BRD9-216ENST00000518251 546 ntTSL 413.77□□□□□ -0.214e-6■□□□□ 8.3
YBX3P16989 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.214e-6■□□□□ 8.3
YBX3P16989 GRSF1-203ENST00000502323 1794 ntTSL 5 BASIC12.97□□□□□ -0.334e-6■□□□□ 8.3
YBX3P16989 C8orf76-203ENST00000518996 836 ntTSL 212.84□□□□□ -0.354e-6■□□□□ 8.3
YBX3P16989 ATP6V1A-206ENST00000496747 710 ntTSL 512.77□□□□□ -0.374e-6■□□□□ 8.3
YBX3P16989 EIF2B2-207ENST00000556668 1011 ntTSL 212.72□□□□□ -0.374e-6■□□□□ 8.3
YBX3P16989 GLB1-215ENST00000482097 547 ntTSL 512.52□□□□□ -0.414e-6■□□□□ 8.3
YBX3P16989 GLB1-216ENST00000485698 550 ntTSL 412.52□□□□□ -0.414e-6■□□□□ 8.3
YBX3P16989 GRSF1-205ENST00000506453 925 ntTSL 312.46□□□□□ -0.414e-6■□□□□ 8.3
YBX3P16989 AC015688.5-202ENST00000579290 532 ntAPPRIS ALT2 TSL 212.34□□□□□ -0.434e-6■□□□□ 8.3
YBX3P16989 DIAPH3-205ENST00000400324 4804 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.444e-6■□□□□ 8.3
YBX3P16989 PSTPIP2-204ENST00000589328 2900 ntTSL 1 (best) BASIC12.02□□□□□ -0.484e-6■□□□□ 8.3
YBX3P16989 GRSF1-206ENST00000508091 419 ntTSL 312.01□□□□□ -0.494e-6■□□□□ 8.3
YBX3P16989 EIF2B2-201ENST00000266126 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.514e-6■□□□□ 8.3
YBX3P16989 GLB1-212ENST00000467571 517 ntTSL 311.87□□□□□ -0.514e-6■□□□□ 8.3
YBX3P16989 PSTPIP2-201ENST00000409746 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.514e-6■□□□□ 8.3
YBX3P16989 BRD9-209ENST00000490814 3477 ntTSL 1 (best)10.93□□□□□ -0.664e-6■□□□□ 8.3
YBX3P16989 RBL2-204ENST00000561512 838 ntTSL 210.66□□□□□ -0.74e-6■□□□□ 8.3
YBX3P16989 TRIP12-211ENST00000459841 1009 ntTSL 310.4□□□□□ -0.744e-6■□□□□ 8.3
YBX3P16989 ATP6V1A-204ENST00000470455 2266 ntTSL 29.89□□□□□ -0.834e-6■□□□□ 8.3
YBX3P16989 CUL4B-201ENST00000336592 3109 ntTSL 5 BASIC9.82□□□□□ -0.842e-6■□□□□ 8.3
YBX3P16989 TIMM9-204ENST00000555097 377 ntTSL 59.76□□□□□ -0.854e-6■□□□□ 8.3
YBX3P16989 DIAPH3-203ENST00000400319 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.854e-6■□□□□ 8.3
YBX3P16989 DIAPH3-204ENST00000400320 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.884e-6■□□□□ 8.3
YBX3P16989 DIAPH3-202ENST00000377908 3549 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.884e-6■□□□□ 8.3
YBX3P16989 DIAPH3-201ENST00000267215 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -14e-6■□□□□ 8.3
YBX3P16989 TIMM9-205ENST00000555404 430 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.014e-6■□□□□ 8.3
YBX3P16989 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.054e-6■□□□□ 8.3
YBX3P16989 ACSM3-210ENST00000567006 520 ntTSL 28.4□□□□□ -1.063e-6■□□□□ 8.3
YBX3P16989 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.083e-9■□□□□ 8.3
YBX3P16989 TIMM9-210ENST00000557397 571 ntTSL 48.03□□□□□ -1.124e-6■□□□□ 8.3
YBX3P16989 ACSM3-214ENST00000569141 405 ntTSL 57.9□□□□□ -1.143e-6■□□□□ 8.3
YBX3P16989 BRD9-211ENST00000494422 449 ntTSL 37.88□□□□□ -1.154e-6■□□□□ 8.3
YBX3P16989 ACSM3-212ENST00000567711 438 ntTSL 37.58□□□□□ -1.23e-6■□□□□ 8.3
YBX3P16989 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC7.57□□□□□ -1.24e-6■□□□□ 8.3
YBX3P16989 SORT1-207ENST00000493736 583 ntTSL 27.53□□□□□ -1.24e-6■□□□□ 8.3
YBX3P16989 RBL2-203ENST00000544405 2025 ntTSL 27.17□□□□□ -1.264e-6■□□□□ 8.3
YBX3P16989 TIMM9-201ENST00000216463 1075 ntTSL 37.05□□□□□ -1.284e-6■□□□□ 8.3
YBX3P16989 IFRD1-208ENST00000443101 440 ntTSL 37.03□□□□□ -1.284e-6■□□□□ 8.3
YBX3P16989 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.324e-6■□□□□ 8.3
YBX3P16989 GLB1-213ENST00000473477 577 ntTSL 36.74□□□□□ -1.334e-6■□□□□ 8.3
YBX3P16989 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC6.73□□□□□ -1.334e-6■□□□□ 8.3
YBX3P16989 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.354e-6■□□□□ 8.3
YBX3P16989 RBL2-202ENST00000379935 4467 ntTSL 1 (best)6.48□□□□□ -1.374e-6■□□□□ 8.3
YBX3P16989 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.42□□□□□ -1.382e-6■□□□□ 8.3
YBX3P16989 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.424e-6■□□□□ 8.3
YBX3P16989 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.93□□□□□ -1.464e-6■□□□□ 8.3
YBX3P16989 C8orf76-202ENST00000517760 485 ntTSL 25.76□□□□□ -1.494e-6■□□□□ 8.3
YBX3P16989 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC5.52□□□□□ -1.534e-6■□□□□ 8.3
YBX3P16989 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.52□□□□□ -1.534e-6■□□□□ 8.3
YBX3P16989 TRIP12-206ENST00000418123 562 ntTSL 45.37□□□□□ -1.554e-6■□□□□ 8.3
YBX3P16989 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.672e-6■□□□□ 8.3
YBX3P16989 MAP3K7-206ENST00000479630 2214 ntTSL 23.72□□□□□ -1.814e-6■□□□□ 8.3
YBX3P16989 GGA3-220ENST00000613421 5156 ntTSL 214.12□□□□□ -0.154e-6■□□□□ 8.3
YBX3P16989 GGA3-221ENST00000614198 3438 ntTSL 211.35□□□□□ -0.594e-6■□□□□ 8.3
YBX3P16989 GGA3-202ENST00000538886 3766 ntTSL 1 (best) BASIC10.55□□□□□ -0.724e-6■□□□□ 8.3
YBX3P16989 GGA3-201ENST00000537686 4069 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.754e-6■□□□□ 8.3
YBX3P16989 GGA3-222ENST00000621217 4181 ntTSL 29.56□□□□□ -0.884e-6■□□□□ 8.3
YBX3P16989 GGA3-223ENST00000621870 4034 ntTSL 1 (best)9.55□□□□□ -0.884e-6■□□□□ 8.3
YBX3P16989 HSF1-207ENST00000529630 646 ntTSL 229.4■■■□□ 2.32e-8■□□□□ 8.3
YBX3P16989 HSF1-203ENST00000528199 659 ntTSL 520.94■□□□□ 0.942e-8■□□□□ 8.3
YBX3P16989 HSF1-212ENST00000533240 561 ntTSL 517.55■□□□□ 0.42e-8■□□□□ 8.3
YBX3P16989 ASAH1-250ENST00000637536 562 ntTSL 429.78■■■□□ 2.367e-8■□□□□ 8.3
YBX3P16989 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC24.83■■□□□ 1.577e-8■□□□□ 8.3
YBX3P16989 ASAH1-266ENST00000637946 913 ntTSL 523.48■■□□□ 1.357e-8■□□□□ 8.3
YBX3P16989 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC22.62■■□□□ 1.217e-8■□□□□ 8.3
YBX3P16989 ASAH1-252ENST00000637603 579 ntTSL 422.09■■□□□ 1.137e-8■□□□□ 8.3
YBX3P16989 ASAH1-212ENST00000523593 586 ntTSL 521.63■■□□□ 1.057e-8■□□□□ 8.3
YBX3P16989 ASAH1-215ENST00000635769 575 ntTSL 421.62■■□□□ 1.057e-8■□□□□ 8.3
YBX3P16989 ASAH1-264ENST00000637898 664 ntTSL 221.56■■□□□ 1.047e-8■□□□□ 8.3
YBX3P16989 ASAH1-244ENST00000637202 1634 ntTSL 521.02■□□□□ 0.967e-8■□□□□ 8.3
YBX3P16989 ASAH1-205ENST00000518087 918 ntTSL 520.88■□□□□ 0.937e-8■□□□□ 8.3
YBX3P16989 ASAH1-207ENST00000519468 746 ntTSL 317.98■□□□□ 0.477e-8■□□□□ 8.3
YBX3P16989 ASAH1-225ENST00000636299 543 ntTSL 412.84□□□□□ -0.357e-8■□□□□ 8.3
YBX3P16989 ASAH1-259ENST00000637792 581 ntTSL 412.84□□□□□ -0.357e-8■□□□□ 8.3
YBX3P16989 ASAH1-229ENST00000636537 1056 ntTSL 2 BASIC12.12□□□□□ -0.477e-8■□□□□ 8.3
YBX3P16989 ASAH1-226ENST00000636435 4611 ntTSL 211.26□□□□□ -0.617e-8■□□□□ 8.3
YBX3P16989 ASAH1-234ENST00000636715 1025 ntTSL 59.51□□□□□ -0.897e-8■□□□□ 8.3
YBX3P16989 ASAH1-260ENST00000637805 780 ntTSL 58.56□□□□□ -1.047e-8■□□□□ 8.3
YBX3P16989 ASAH1-238ENST00000636828 3365 ntTSL 26.01□□□□□ -1.457e-8■□□□□ 8.3
YBX3P16989 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC34.63■■■■□ 3.134e-6■□□□□ 8.3
YBX3P16989 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC34.05■■■■□ 3.044e-6■□□□□ 8.3
YBX3P16989 ATP6AP1-203ENST00000429585 769 ntTSL 533.86■■■■□ 3.014e-6■□□□□ 8.3
YBX3P16989 HOXB2-203ENST00000571287 625 ntTSL 330.62■■■□□ 2.494e-6■□□□□ 8.3
YBX3P16989 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC29.77■■■□□ 2.364e-6■□□□□ 8.3
YBX3P16989 PAQR3-210ENST00000512760 1431 ntTSL 1 (best)29.23■■■□□ 2.273e-9■□□□□ 8.3
YBX3P16989 CYB5R1-204ENST00000478009 899 ntTSL 228.1■■■□□ 2.094e-6■□□□□ 8.3
YBX3P16989 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.034e-6■□□□□ 8.3
YBX3P16989 ATP6AP1-202ENST00000422890 867 ntTSL 526.39■■□□□ 1.824e-6■□□□□ 8.3
YBX3P16989 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.724e-6■□□□□ 8.3
YBX3P16989 TMEM41A-202ENST00000382227 541 ntTSL 425.7■■□□□ 1.74e-6■□□□□ 8.3
YBX3P16989 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.664e-6■□□□□ 8.3
YBX3P16989 PPAN-205ENST00000446223 844 ntTSL 325.13■■□□□ 1.614e-6■□□□□ 8.3
YBX3P16989 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC25.07■■□□□ 1.64e-6■□□□□ 8.3
YBX3P16989 CTTN-204ENST00000393747 1315 ntTSL 524.42■■□□□ 1.53e-9■□□□□ 8.3
YBX3P16989 PAQR3-201ENST00000342820 2153 ntTSL 1 (best)24.26■■□□□ 1.473e-9■□□□□ 8.3
YBX3P16989 NAA50-205ENST00000481432 958 ntTSL 324■■□□□ 1.434e-6■□□□□ 8.3
YBX3P16989 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.194e-6■□□□□ 8.3
Retrieved 100 of 29,075 protein–RNA pairs in 667.8 ms