RNA–Protein interactions for RNA: ENST00000567006.1

ACSM3-210, Transcript of acyl-CoA synthetase medium chain family member 3, humanhuman

TSL 2

Gene ACSM3, Length 520 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACSM3-210ENST00000567006 AEBP2Q6ZN18 517 aaPredicted RBP29.9■■■□□ 2.38
ACSM3-210ENST00000567006 CHIC1Q5VXU3 224 aa28.63■■■□□ 2.17
ACSM3-210ENST00000567006 SENP3Q9H4L4 574 aaPredicted RBP25.58■■□□□ 1.69
ACSM3-210ENST00000567006 PHF23Q9BUL5 403 aaPredicted RBP25.24■■□□□ 1.63
ACSM3-210ENST00000567006 FOXD1Q16676 465 aa23.76■■□□□ 1.39
ACSM3-210ENST00000567006 PLPPR3Q6T4P5 718 aa23■■□□□ 1.27
ACSM3-210ENST00000567006 PPP6R1Q9UPN7 881 aa22.32■■□□□ 1.16
ACSM3-210ENST00000567006 ADRA2BP18089 450 aa22.28■■□□□ 1.16
ACSM3-210ENST00000567006 PIAS4Q8N2W9 510 aaPredicted RBP22.28■■□□□ 1.16
ACSM3-210ENST00000567006 MSH5O43196 834 aa22.25■■□□□ 1.15
ACSM3-210ENST00000567006 POTEDQ86YR6 584 aa21.34■■□□□ 1.01
ACSM3-210ENST00000567006 SCAF1Q9H7N4 1312 aaKnown RBP20.52■□□□□ 0.87
ACSM3-210ENST00000567006 MAPK8IP2Q13387 824 aaPredicted RBP20.4■□□□□ 0.86
ACSM3-210ENST00000567006 DMRT2Q9Y5R5 561 aa20.29■□□□□ 0.84
ACSM3-210ENST00000567006 PPP4R3CPQ6ZMV5 832 aa20.16■□□□□ 0.82
ACSM3-210ENST00000567006 CNKSR2Q8WXI2 1034 aa19.76■□□□□ 0.75
ACSM3-210ENST00000567006 HOXD11P31277 338 aaPredicted RBP19.61■□□□□ 0.73
ACSM3-210ENST00000567006 RNF216Q9NWF9 866 aaPredicted RBP19.53■□□□□ 0.72
ACSM3-210ENST00000567006 NCBP3Q53F19 620 aaKnown RBP19.51■□□□□ 0.71
ACSM3-210ENST00000567006 DCAF8L1A6NGE4 600 aa19.47■□□□□ 0.71
ACSM3-210ENST00000567006 NPM3O75607 178 aaKnown RBP19.13■□□□□ 0.65
ACSM3-210ENST00000567006 CACNB1Q02641 598 aaPredicted RBP18.97■□□□□ 0.63
ACSM3-210ENST00000567006 DNAJC5BQ9UF47 199 aa18.96■□□□□ 0.63
ACSM3-210ENST00000567006 RNF39Q9H2S5 420 aa18.95■□□□□ 0.62
ACSM3-210ENST00000567006 KCNA4P22459 653 aa18.91■□□□□ 0.62
ACSM3-210ENST00000567006 C1QBPQ07021 282 aaKnown RBP18.73■□□□□ 0.59
ACSM3-210ENST00000567006 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.73■□□□□ 0.59
ACSM3-210ENST00000567006 U3KPZ7 1027 aaPredicted RBP18.28■□□□□ 0.52
ACSM3-210ENST00000567006 SLC4A2P04920 1241 aa18.2■□□□□ 0.5
ACSM3-210ENST00000567006 CAPN15O75808 1086 aa17.98■□□□□ 0.47
ACSM3-210ENST00000567006 SPINK5Q9NQ38 1064 aaPredicted RBP17.96■□□□□ 0.47
ACSM3-210ENST00000567006 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.95■□□□□ 0.46
ACSM3-210ENST00000567006 HNRNPUL2Q1KMD3 747 aaKnown RBP17.95■□□□□ 0.46
ACSM3-210ENST00000567006 APLP2Q06481 763 aa17.93■□□□□ 0.46
ACSM3-210ENST00000567006 SLC4A1APQ9BWU0 796 aaKnown RBP17.93■□□□□ 0.46
ACSM3-210ENST00000567006 SAMD1Q6SPF0 538 aaPredicted RBP17.83■□□□□ 0.44
ACSM3-210ENST00000567006 DSG3P32926 999 aa17.8■□□□□ 0.44
ACSM3-210ENST00000567006 MYCNP04198 464 aaPredicted RBP17.75■□□□□ 0.43
ACSM3-210ENST00000567006 ZNF219Q9P2Y4 722 aaPredicted RBP17.74■□□□□ 0.43
ACSM3-210ENST00000567006 TRHP20396 242 aaPredicted RBP17.73■□□□□ 0.43
ACSM3-210ENST00000567006 FOXD4L1Q9NU39 408 aa17.64■□□□□ 0.41
ACSM3-210ENST00000567006 ABCB7O75027 752 aa17.54■□□□□ 0.4
ACSM3-210ENST00000567006 ZBTB22O15209 634 aa17.35■□□□□ 0.37
ACSM3-210ENST00000567006 POLA2Q14181 598 aa17.29■□□□□ 0.36
ACSM3-210ENST00000567006 ATF5Q9Y2D1 282 aaPredicted RBP17.23■□□□□ 0.35
ACSM3-210ENST00000567006 ATXN8OSP0DMR3 200 aa17.12■□□□□ 0.33
ACSM3-210ENST00000567006 RBM42Q9BTD8 480 aaKnown RBP17.05■□□□□ 0.32
ACSM3-210ENST00000567006 ZBTB12Q9Y330 459 aaPredicted RBP17.02■□□□□ 0.32
ACSM3-210ENST00000567006 POTEHQ6S545 545 aa16.78■□□□□ 0.28
ACSM3-210ENST00000567006 CSRNP3Q8WYN3 585 aa16.74■□□□□ 0.27
ACSM3-210ENST00000567006 OSCARQ8IYS5 282 aa16.7■□□□□ 0.26
ACSM3-210ENST00000567006 AKT1S1Q96B36 256 aa16.68■□□□□ 0.26
ACSM3-210ENST00000567006 FBLN2P98095 1184 aa16.67■□□□□ 0.26
ACSM3-210ENST00000567006 EHMT2Q96KQ7 1210 aa16.64■□□□□ 0.25
ACSM3-210ENST00000567006 CHRDL2Q6WN34 429 aa16.56■□□□□ 0.24
ACSM3-210ENST00000567006 REM2Q8IYK8 340 aaPredicted RBP16.49■□□□□ 0.23
ACSM3-210ENST00000567006 SPDYE2BA6NHP3 402 aa16.47■□□□□ 0.23
ACSM3-210ENST00000567006 SPDYE6P0CI01 402 aa16.47■□□□□ 0.23
ACSM3-210ENST00000567006 SPDYE2Q495Y8 402 aa16.47■□□□□ 0.23
ACSM3-210ENST00000567006 MKRN4PQ13434 485 aaPredicted RBP16.46■□□□□ 0.23
ACSM3-210ENST00000567006 ZNF692Q9BU19 519 aaPredicted RBP16.3■□□□□ 0.2
ACSM3-210ENST00000567006 PITPNM1O00562 1244 aa16.29■□□□□ 0.2
ACSM3-210ENST00000567006 SSUH2Q9Y2M2 353 aa16.24■□□□□ 0.19
ACSM3-210ENST00000567006 PIP4P2Q8N4L2 257 aa16.18■□□□□ 0.18
ACSM3-210ENST00000567006 SPDYE1Q8NFV5 336 aaPredicted RBP16.15■□□□□ 0.18
ACSM3-210ENST00000567006 FXR2P51116 673 aaKnown RBP eCLIP16.13■□□□□ 0.17
ACSM3-210ENST00000567006 CLEC11AQ9Y240 323 aa16.1■□□□□ 0.17
ACSM3-210ENST00000567006 PABPN1Q86U42 306 aaKnown RBP eCLIP16.04■□□□□ 0.16
ACSM3-210ENST00000567006 PRKAR2AP13861 404 aaKnown RBP15.9■□□□□ 0.14
ACSM3-210ENST00000567006 HAX1O00165 279 aa15.88■□□□□ 0.13
ACSM3-210ENST00000567006 PRR29P0C7W0 189 aa15.87■□□□□ 0.13
ACSM3-210ENST00000567006 SPDYE4A6NLX3 237 aa15.83■□□□□ 0.12
ACSM3-210ENST00000567006 SP7Q8TDD2 431 aaPredicted RBP15.82■□□□□ 0.12
ACSM3-210ENST00000567006 CHADLQ6NUI6 762 aa15.72■□□□□ 0.11
ACSM3-210ENST00000567006 STAG3Q9UJ98 1225 aa15.72■□□□□ 0.11
ACSM3-210ENST00000567006 C19orf67A6NJJ6 358 aa15.61■□□□□ 0.09
ACSM3-210ENST00000567006 EVX2Q03828 476 aa15.6■□□□□ 0.09
ACSM3-210ENST00000567006 FARP1Q9Y4F1 1045 aaPredicted RBP15.55■□□□□ 0.08
ACSM3-210ENST00000567006 CREBZFQ9NS37 354 aa15.47■□□□□ 0.07
ACSM3-210ENST00000567006 PROM2Q8N271 834 aa15.45■□□□□ 0.06
ACSM3-210ENST00000567006 CD44P16070 742 aaKnown RBP15.41■□□□□ 0.06
ACSM3-210ENST00000567006 GABBR2O75899 941 aa15.33■□□□□ 0.04
ACSM3-210ENST00000567006 NPM1P06748 294 aaKnown RBP eCLIP15.28■□□□□ 0.04
ACSM3-210ENST00000567006 CLCN6P51797 869 aa15.26■□□□□ 0.03
ACSM3-210ENST00000567006 ZRANB1Q9UGI0 708 aa15.22■□□□□ 0.03
ACSM3-210ENST00000567006 MNX1P50219 401 aaPredicted RBP15.21■□□□□ 0.03
ACSM3-210ENST00000567006 FKBP8Q14318 412 aa15.21■□□□□ 0.03
ACSM3-210ENST00000567006 PAK3O75914 559 aaPredicted RBP15.2■□□□□ 0.02
ACSM3-210ENST00000567006 ZNF579Q8NAF0 562 aaKnown RBP15.18■□□□□ 0.02
ACSM3-210ENST00000567006 PLEKHG5O94827 1062 aa15.16■□□□□ 0.02
ACSM3-210ENST00000567006 MIER1Q8N108 512 aa15.12■□□□□ 0.01
ACSM3-210ENST00000567006 PLCD3Q8N3E9 789 aa15.03■□□□□ -0
ACSM3-210ENST00000567006 DCBLD2Q96PD2 775 aa15.01□□□□□ -0.01
ACSM3-210ENST00000567006 PHF12Q96QT6 1004 aa14.98□□□□□ -0.01
ACSM3-210ENST00000567006 POTEIP0CG38 1075 aa14.95□□□□□ -0.02
ACSM3-210ENST00000567006 TSPYL2Q9H2G4 693 aaPredicted RBP14.95□□□□□ -0.02
ACSM3-210ENST00000567006 ZBTB47Q9UFB7 747 aaPredicted RBP14.95□□□□□ -0.02
ACSM3-210ENST00000567006 GALR2O43603 387 aaPredicted RBP14.94□□□□□ -0.02
ACSM3-210ENST00000567006 FBXO3Q9UK99 471 aa14.93□□□□□ -0.02
ACSM3-210ENST00000567006 LHX8Q68G74 356 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms