Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC11.12□□□□□ -0.63
CXCL1P09341 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC11.12□□□□□ -0.63
CXCL1P09341 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC11.12□□□□□ -0.63
CXCL1P09341 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC11.12□□□□□ -0.63
CXCL1P09341 AL589739.1-201ENST00000607720 493 ntBASIC11.12□□□□□ -0.63
CXCL1P09341 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC11.12□□□□□ -0.63
CXCL1P09341 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC11.12□□□□□ -0.63
CXCL1P09341 PHB-210ENST00000511832 1509 ntTSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC11.12□□□□□ -0.63
CXCL1P09341 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC11.12□□□□□ -0.63
CXCL1P09341 NPR2-201ENST00000342694 3686 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC11.12□□□□□ -0.63
CXCL1P09341 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 PHC2-201ENST00000257118 3870 ntAPPRIS P4 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 EPB42-202ENST00000441366 2374 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 ZIC3-201ENST00000287538 3469 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 DACH2-201ENST00000373125 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 PLEKHA2-207ENST00000616834 3594 ntTSL 5 BASIC11.12□□□□□ -0.63
CXCL1P09341 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 KLK2-202ENST00000358049 2847 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC11.12□□□□□ -0.63
CXCL1P09341 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CXCL1P09341 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 ARHGEF9-226ENST00000636392 1920 ntTSL 5 BASIC11.11□□□□□ -0.63
CXCL1P09341 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
CXCL1P09341 ZNF302-203ENST00000457781 2600 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 NUP62-208ENST00000596217 3590 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 A1CF-204ENST00000373997 2116 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 AL137783.1-201ENST00000623494 1896 ntBASIC11.11□□□□□ -0.63
CXCL1P09341 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC11.11□□□□□ -0.63
CXCL1P09341 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
CXCL1P09341 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
CXCL1P09341 AC023274.1-201ENST00000418278 595 ntBASIC11.11□□□□□ -0.63
CXCL1P09341 SPDYE7P-202ENST00000420373 878 ntBASIC11.11□□□□□ -0.63
CXCL1P09341 AL590627.1-203ENST00000421194 1026 ntBASIC11.11□□□□□ -0.63
CXCL1P09341 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC11.11□□□□□ -0.63
CXCL1P09341 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC11.11□□□□□ -0.63
CXCL1P09341 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
CXCL1P09341 MTDHP5-201ENST00000598980 586 ntBASIC11.11□□□□□ -0.63
CXCL1P09341 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC11.11□□□□□ -0.63
CXCL1P09341 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 BAP1-211ENST00000615113 489 ntBASIC11.11□□□□□ -0.63
CXCL1P09341 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
CXCL1P09341 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC11.11□□□□□ -0.63
CXCL1P09341 AL513210.1-201ENST00000629608 234 ntBASIC11.11□□□□□ -0.63
CXCL1P09341 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
CXCL1P09341 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 MME-204ENST00000462745 3590 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
CXCL1P09341 SLITRK3-201ENST00000241274 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 MATR3-227ENST00000618441 4018 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 BHMT-201ENST00000274353 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC11.11□□□□□ -0.63
CXCL1P09341 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC11.11□□□□□ -0.63
CXCL1P09341 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 AC002350.2-201ENST00000623894 1828 ntBASIC11.11□□□□□ -0.63
CXCL1P09341 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 ELL2P1-201ENST00000413990 1906 ntBASIC11.11□□□□□ -0.63
CXCL1P09341 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 C1QTNF6-201ENST00000337843 2934 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 FMO1-203ENST00000402921 2003 ntTSL 2 BASIC11.11□□□□□ -0.63
CXCL1P09341 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 CYP24A1-203ENST00000395955 2227 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 C1orf216-201ENST00000270815 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
CXCL1P09341 CAST-223ENST00000508608 2425 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 RUFY4-202ENST00000374155 2977 ntTSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC11.1□□□□□ -0.63
CXCL1P09341 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC11.1□□□□□ -0.63
CXCL1P09341 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 PAX2-203ENST00000370296 4140 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 PAX2-205ENST00000428433 4126 ntTSL 5 BASIC11.1□□□□□ -0.63
CXCL1P09341 HJURP-204ENST00000432087 3027 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 RFWD3-202ENST00000571750 3033 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 SMIM27-203ENST00000451672 2382 ntAPPRIS ALT2 BASIC11.1□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 151.4 ms