Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.12■□□□□ 0.17
CCNA1P78396 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 HMGA1P1-201ENST00000415560 1062 ntBASIC16.12■□□□□ 0.17
CCNA1P78396 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC16.12■□□□□ 0.17
CCNA1P78396 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC16.12■□□□□ 0.17
CCNA1P78396 GALP-202ENST00000440823 889 ntTSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC16.12■□□□□ 0.17
CCNA1P78396 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC16.12■□□□□ 0.17
CCNA1P78396 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
CCNA1P78396 AC068831.5-201ENST00000557387 328 ntBASIC16.12■□□□□ 0.17
CCNA1P78396 COQ4-204ENST00000608951 781 ntTSL 2 BASIC16.12■□□□□ 0.17
CCNA1P78396 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.12■□□□□ 0.17
CCNA1P78396 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CCNA1P78396 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCNA1P78396 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CCNA1P78396 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.11■□□□□ 0.17
CCNA1P78396 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CCNA1P78396 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.11■□□□□ 0.17
CCNA1P78396 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.11■□□□□ 0.17
CCNA1P78396 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.11■□□□□ 0.17
CCNA1P78396 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC16.11■□□□□ 0.17
CCNA1P78396 MIR566-201ENST00000385187 94 ntBASIC16.11■□□□□ 0.17
CCNA1P78396 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
CCNA1P78396 AC073210.1-201ENST00000414799 232 ntBASIC16.11■□□□□ 0.17
CCNA1P78396 PSAT1P2-201ENST00000426107 972 ntBASIC16.11■□□□□ 0.17
CCNA1P78396 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 STK24P1-201ENST00000455035 1291 ntBASIC16.11■□□□□ 0.17
CCNA1P78396 COQ10BP2-201ENST00000513804 724 ntBASIC16.11■□□□□ 0.17
CCNA1P78396 KRT18P37-201ENST00000520711 1282 ntBASIC16.11■□□□□ 0.17
CCNA1P78396 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC16.11■□□□□ 0.17
CCNA1P78396 DLK1-205ENST00000556051 469 ntTSL 2 BASIC16.11■□□□□ 0.17
CCNA1P78396 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC16.11■□□□□ 0.17
CCNA1P78396 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC16.11■□□□□ 0.17
CCNA1P78396 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
CCNA1P78396 AL160191.2-201ENST00000603975 601 ntBASIC16.11■□□□□ 0.17
CCNA1P78396 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC16.11■□□□□ 0.17
CCNA1P78396 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.11■□□□□ 0.17
CCNA1P78396 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC16.11■□□□□ 0.17
CCNA1P78396 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CCNA1P78396 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
CCNA1P78396 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCNA1P78396 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.11■□□□□ 0.17
CCNA1P78396 DUT-208ENST00000559540 1441 ntTSL 2 BASIC16.11■□□□□ 0.17
CCNA1P78396 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CCNA1P78396 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.1■□□□□ 0.17
CCNA1P78396 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.1■□□□□ 0.17
CCNA1P78396 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.1■□□□□ 0.17
CCNA1P78396 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.1■□□□□ 0.17
CCNA1P78396 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.1■□□□□ 0.17
CCNA1P78396 EML1-203ENST00000334192 4064 ntTSL 5 BASIC16.1■□□□□ 0.17
CCNA1P78396 AL365181.1-201ENST00000564032 1828 ntBASIC16.1■□□□□ 0.17
CCNA1P78396 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
CCNA1P78396 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCNA1P78396 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCNA1P78396 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.1■□□□□ 0.17
CCNA1P78396 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCNA1P78396 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CCNA1P78396 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms