Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PTPN9P43378 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 AL157791.1-201ENST00000553667 1699 ntBASIC14.84□□□□□ -0.03
PTPN9P43378 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.84□□□□□ -0.03
PTPN9P43378 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
PTPN9P43378 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
PTPN9P43378 AC061965.1-201ENST00000560524 1465 ntBASIC14.84□□□□□ -0.03
PTPN9P43378 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 CROT-203ENST00000419147 2959 ntTSL 2 BASIC14.84□□□□□ -0.03
PTPN9P43378 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 AC239868.1-201ENST00000369385 493 ntBASIC14.84□□□□□ -0.03
PTPN9P43378 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 GPAA1P2-201ENST00000417923 928 ntBASIC14.84□□□□□ -0.03
PTPN9P43378 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC14.84□□□□□ -0.03
PTPN9P43378 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.84□□□□□ -0.03
PTPN9P43378 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.84□□□□□ -0.03
PTPN9P43378 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.84□□□□□ -0.03
PTPN9P43378 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PTPN9P43378 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PTPN9P43378 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PTPN9P43378 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
PTPN9P43378 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
PTPN9P43378 DUT-208ENST00000559540 1441 ntTSL 2 BASIC14.83□□□□□ -0.03
PTPN9P43378 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN9P43378 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN9P43378 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN9P43378 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN9P43378 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
PTPN9P43378 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN9P43378 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN9P43378 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
PTPN9P43378 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN9P43378 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.83□□□□□ -0.03
PTPN9P43378 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN9P43378 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN9P43378 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN9P43378 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.83□□□□□ -0.04
PTPN9P43378 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
PTPN9P43378 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN9P43378 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN9P43378 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
PTPN9P43378 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.83□□□□□ -0.04
PTPN9P43378 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 AL596276.2-201ENST00000447525 331 ntBASIC14.83□□□□□ -0.04
PTPN9P43378 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.83□□□□□ -0.04
PTPN9P43378 CHCHD2P2-201ENST00000503744 321 ntBASIC14.83□□□□□ -0.04
PTPN9P43378 AC116345.2-201ENST00000512837 523 ntBASIC14.83□□□□□ -0.04
PTPN9P43378 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.83□□□□□ -0.04
PTPN9P43378 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
PTPN9P43378 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC14.83□□□□□ -0.04
PTPN9P43378 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN9P43378 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
PTPN9P43378 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
PTPN9P43378 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN9P43378 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
PTPN9P43378 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
PTPN9P43378 AC072061.1-201ENST00000569710 2234 ntBASIC14.82□□□□□ -0.04
PTPN9P43378 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.82□□□□□ -0.04
PTPN9P43378 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PTPN9P43378 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.82□□□□□ -0.04
PTPN9P43378 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PTPN9P43378 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 AC010327.5-201ENST00000586923 3061 ntBASIC14.82□□□□□ -0.04
PTPN9P43378 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.82□□□□□ -0.04
PTPN9P43378 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.82□□□□□ -0.04
PTPN9P43378 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms