Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SCN4AP35499 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC16.27■□□□□ 0.2
SCN4AP35499 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SCN4AP35499 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SCN4AP35499 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SCN4AP35499 Z84721.1-201ENST00000438841 372 ntBASIC16.27■□□□□ 0.2
SCN4AP35499 AACSP1-202ENST00000521412 1095 ntBASIC16.27■□□□□ 0.2
SCN4AP35499 AP001102.1-201ENST00000528959 409 ntBASIC16.27■□□□□ 0.2
SCN4AP35499 HNRNPA1P72-201ENST00000529511 967 ntBASIC16.27■□□□□ 0.2
SCN4AP35499 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.2
SCN4AP35499 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC16.27■□□□□ 0.2
SCN4AP35499 AC005920.4-201ENST00000573301 492 ntTSL 4 BASIC16.27■□□□□ 0.2
SCN4AP35499 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC16.27■□□□□ 0.2
SCN4AP35499 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
SCN4AP35499 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SCN4AP35499 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.27■□□□□ 0.2
SCN4AP35499 RN7SL832P-201ENST00000607781 1756 ntBASIC16.27■□□□□ 0.2
SCN4AP35499 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
SCN4AP35499 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
SCN4AP35499 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.27■□□□□ 0.19
SCN4AP35499 AC090505.1-201ENST00000430515 1834 ntBASIC16.27■□□□□ 0.19
SCN4AP35499 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.27■□□□□ 0.19
SCN4AP35499 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SCN4AP35499 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SCN4AP35499 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SCN4AP35499 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SCN4AP35499 PPT1-215ENST00000641471 2368 ntBASIC16.27■□□□□ 0.19
SCN4AP35499 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.19
SCN4AP35499 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
SCN4AP35499 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
SCN4AP35499 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
SCN4AP35499 SERPINB8P1-201ENST00000401898 377 ntBASIC16.26■□□□□ 0.19
SCN4AP35499 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC16.26■□□□□ 0.19
SCN4AP35499 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 FTH1-205ENST00000529631 507 ntTSL 4 BASIC16.26■□□□□ 0.19
SCN4AP35499 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC16.26■□□□□ 0.19
SCN4AP35499 AL139317.2-201ENST00000556998 158 ntBASIC16.26■□□□□ 0.19
SCN4AP35499 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC16.26■□□□□ 0.19
SCN4AP35499 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC16.26■□□□□ 0.19
SCN4AP35499 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
SCN4AP35499 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.26■□□□□ 0.19
SCN4AP35499 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 TUBA3GP-201ENST00000410028 1325 ntBASIC16.26■□□□□ 0.19
SCN4AP35499 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC16.26■□□□□ 0.19
SCN4AP35499 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC16.26■□□□□ 0.19
SCN4AP35499 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.26■□□□□ 0.19
SCN4AP35499 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SCN4AP35499 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 AC089987.1-201ENST00000551654 2209 ntBASIC16.26■□□□□ 0.19
SCN4AP35499 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 SNORA50D-201ENST00000408059 134 ntBASIC16.26■□□□□ 0.19
SCN4AP35499 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC16.26■□□□□ 0.19
SCN4AP35499 RN7SL638P-201ENST00000494527 290 ntBASIC16.26■□□□□ 0.19
SCN4AP35499 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC16.26■□□□□ 0.19
SCN4AP35499 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 PACRG-AS3-204ENST00000620150 567 ntTSL 4 BASIC16.26■□□□□ 0.19
SCN4AP35499 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SCN4AP35499 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 AC018529.2-202ENST00000611482 3087 ntBASIC16.26■□□□□ 0.19
SCN4AP35499 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SCN4AP35499 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.26■□□□□ 0.19
SCN4AP35499 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SCN4AP35499 AC015813.5-201ENST00000624641 1514 ntBASIC16.26■□□□□ 0.19
SCN4AP35499 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SCN4AP35499 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC16.25■□□□□ 0.19
SCN4AP35499 SPG20-AS1-203ENST00000493739 566 ntTSL 3 BASIC16.25■□□□□ 0.19
SCN4AP35499 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC16.25■□□□□ 0.19
SCN4AP35499 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC16.25■□□□□ 0.19
SCN4AP35499 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC16.25■□□□□ 0.19
SCN4AP35499 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC16.25■□□□□ 0.19
SCN4AP35499 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC16.25■□□□□ 0.19
SCN4AP35499 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms