Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CIITAP33076 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CIITAP33076 AC068760.1-201ENST00000493579 1953 ntBASIC16.02■□□□□ 0.15
CIITAP33076 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CIITAP33076 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CIITAP33076 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC16.02■□□□□ 0.15
CIITAP33076 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CIITAP33076 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC16.02■□□□□ 0.15
CIITAP33076 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
CIITAP33076 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 SARS-202ENST00000369923 1882 ntTSL 5 BASIC16.01■□□□□ 0.15
CIITAP33076 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.01■□□□□ 0.15
CIITAP33076 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CIITAP33076 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 AL139158.3-201ENST00000641212 1562 ntBASIC16.01■□□□□ 0.15
CIITAP33076 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CIITAP33076 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CIITAP33076 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CIITAP33076 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CIITAP33076 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CIITAP33076 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC16.01■□□□□ 0.15
CIITAP33076 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.01■□□□□ 0.15
CIITAP33076 AC130709.1-201ENST00000484779 1212 ntBASIC16.01■□□□□ 0.15
CIITAP33076 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC16.01■□□□□ 0.15
CIITAP33076 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.01■□□□□ 0.15
CIITAP33076 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC16.01■□□□□ 0.15
CIITAP33076 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 AC138894.2-201ENST00000602838 371 ntBASIC16.01■□□□□ 0.15
CIITAP33076 AC103691.2-201ENST00000618824 433 ntBASIC16.01■□□□□ 0.15
CIITAP33076 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
CIITAP33076 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
CIITAP33076 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CIITAP33076 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16■□□□□ 0.15
CIITAP33076 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16■□□□□ 0.15
CIITAP33076 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16■□□□□ 0.15
CIITAP33076 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
CIITAP33076 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CIITAP33076 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
CIITAP33076 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC16■□□□□ 0.15
CIITAP33076 KRT8P43-201ENST00000406052 1458 ntBASIC16■□□□□ 0.15
CIITAP33076 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CIITAP33076 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16■□□□□ 0.15
CIITAP33076 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16■□□□□ 0.15
CIITAP33076 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16■□□□□ 0.15
CIITAP33076 SLC25A15P3-201ENST00000505530 290 ntBASIC16■□□□□ 0.15
CIITAP33076 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC16■□□□□ 0.15
CIITAP33076 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16■□□□□ 0.15
CIITAP33076 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16■□□□□ 0.15
CIITAP33076 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC16■□□□□ 0.15
CIITAP33076 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16■□□□□ 0.15
CIITAP33076 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16■□□□□ 0.15
CIITAP33076 MIR4522-201ENST00000584932 87 ntBASIC16■□□□□ 0.15
CIITAP33076 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 AC016629.1-201ENST00000596579 586 ntBASIC16■□□□□ 0.15
CIITAP33076 HCG18-245ENST00000602550 559 ntTSL 4 BASIC16■□□□□ 0.15
CIITAP33076 AC103810.10-201ENST00000606504 343 ntBASIC16■□□□□ 0.15
CIITAP33076 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16■□□□□ 0.15
CIITAP33076 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16■□□□□ 0.15
CIITAP33076 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
CIITAP33076 AC009145.4-201ENST00000625119 1294 ntBASIC16■□□□□ 0.15
CIITAP33076 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms