Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC11□□□□□ -0.65
HLA-DMBP28068 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC11□□□□□ -0.65
HLA-DMBP28068 ALG3P1-201ENST00000508806 1114 ntBASIC11□□□□□ -0.65
HLA-DMBP28068 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC11□□□□□ -0.65
HLA-DMBP28068 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 Six3os1_5.1-201ENST00000611000 271 ntBASIC11□□□□□ -0.65
HLA-DMBP28068 AC244669.2-201ENST00000612320 853 ntBASIC11□□□□□ -0.65
HLA-DMBP28068 RPS24-214ENST00000613865 538 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 AC064801.2-201ENST00000625052 1303 ntBASIC11□□□□□ -0.65
HLA-DMBP28068 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC11□□□□□ -0.65
HLA-DMBP28068 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 AC099521.3-201ENST00000624251 2938 ntBASIC11□□□□□ -0.65
HLA-DMBP28068 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 AL445209.1-201ENST00000607269 3491 ntBASIC11□□□□□ -0.65
HLA-DMBP28068 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
HLA-DMBP28068 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HLA-DMBP28068 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 GUK1-206ENST00000366723 845 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 AL161932.2-201ENST00000435436 679 ntBASIC10.99□□□□□ -0.65
HLA-DMBP28068 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 CICP12-201ENST00000455801 843 ntBASIC10.99□□□□□ -0.65
HLA-DMBP28068 AC007551.1-201ENST00000457394 519 ntBASIC10.99□□□□□ -0.65
HLA-DMBP28068 FTH1P14-201ENST00000482930 551 ntBASIC10.99□□□□□ -0.65
HLA-DMBP28068 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 SNX29P1-201ENST00000548357 1007 ntBASIC10.99□□□□□ -0.65
HLA-DMBP28068 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 HARS-202ENST00000415192 1401 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms