Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
COL5A1P20908 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
COL5A1P20908 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
COL5A1P20908 SNU13-204ENST00000402458 462 ntTSL 3 BASIC13.33□□□□□ -0.28
COL5A1P20908 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC13.33□□□□□ -0.28
COL5A1P20908 OR7E155P-201ENST00000412208 1014 ntBASIC13.33□□□□□ -0.28
COL5A1P20908 CD37-203ENST00000426897 1204 ntTSL 2 BASIC13.33□□□□□ -0.28
COL5A1P20908 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.33□□□□□ -0.28
COL5A1P20908 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC13.33□□□□□ -0.28
COL5A1P20908 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC13.33□□□□□ -0.28
COL5A1P20908 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC13.33□□□□□ -0.28
COL5A1P20908 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC13.33□□□□□ -0.28
COL5A1P20908 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC13.33□□□□□ -0.28
COL5A1P20908 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
COL5A1P20908 PHF23-213ENST00000613632 850 ntTSL 5 BASIC13.33□□□□□ -0.28
COL5A1P20908 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.33□□□□□ -0.28
COL5A1P20908 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
COL5A1P20908 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
COL5A1P20908 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
COL5A1P20908 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC13.33□□□□□ -0.28
COL5A1P20908 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 WASH7P-201ENST00000488147 1351 ntBASIC13.33□□□□□ -0.28
COL5A1P20908 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.33□□□□□ -0.28
COL5A1P20908 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
COL5A1P20908 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC13.32□□□□□ -0.28
COL5A1P20908 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 SNX15-201ENST00000352068 771 ntTSL 5 BASIC13.32□□□□□ -0.28
COL5A1P20908 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL5A1P20908 AC010086.2-201ENST00000428616 226 ntBASIC13.32□□□□□ -0.28
COL5A1P20908 KRT8P30-201ENST00000432100 650 ntBASIC13.32□□□□□ -0.28
COL5A1P20908 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC13.32□□□□□ -0.28
COL5A1P20908 MIR2278-201ENST00000516344 96 ntBASIC13.32□□□□□ -0.28
COL5A1P20908 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC13.32□□□□□ -0.28
COL5A1P20908 CR392039.1-201ENST00000623217 204 ntBASIC13.32□□□□□ -0.28
COL5A1P20908 AC245369.7-201ENST00000631386 350 ntBASIC13.32□□□□□ -0.28
COL5A1P20908 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC13.32□□□□□ -0.28
COL5A1P20908 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 AC090643.2-201ENST00000623442 2029 ntBASIC13.32□□□□□ -0.28
COL5A1P20908 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL5A1P20908 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL5A1P20908 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC13.32□□□□□ -0.28
COL5A1P20908 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 U73169.1-201ENST00000395152 367 ntBASIC13.32□□□□□ -0.28
COL5A1P20908 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC13.32□□□□□ -0.28
COL5A1P20908 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC13.32□□□□□ -0.28
COL5A1P20908 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 DUT-207ENST00000559416 635 ntTSL 2 BASIC13.32□□□□□ -0.28
COL5A1P20908 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC13.32□□□□□ -0.28
COL5A1P20908 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC13.32□□□□□ -0.28
COL5A1P20908 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC13.32□□□□□ -0.28
COL5A1P20908 NEK4P3-201ENST00000604859 544 ntBASIC13.32□□□□□ -0.28
COL5A1P20908 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL5A1P20908 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
COL5A1P20908 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.31□□□□□ -0.28
COL5A1P20908 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.31□□□□□ -0.28
COL5A1P20908 Z98885.3-201ENST00000624882 1757 ntBASIC13.31□□□□□ -0.28
COL5A1P20908 AC008536.3-201ENST00000623282 1599 ntBASIC13.31□□□□□ -0.28
COL5A1P20908 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.31□□□□□ -0.28
COL5A1P20908 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 DDC-204ENST00000426377 1700 ntTSL 3 BASIC13.31□□□□□ -0.28
COL5A1P20908 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL5A1P20908 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL5A1P20908 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC13.31□□□□□ -0.28
COL5A1P20908 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms