Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC12.98□□□□□ -0.33
FREM3P0C091 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 RPSAP15-201ENST00000448168 861 ntBASIC12.98□□□□□ -0.33
FREM3P0C091 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC12.98□□□□□ -0.33
FREM3P0C091 CENPX-208ENST00000584347 799 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 ADK-205ENST00000539909 1866 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 AC089987.1-201ENST00000551654 2209 ntBASIC12.98□□□□□ -0.33
FREM3P0C091 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
FREM3P0C091 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 SOD2-202ENST00000367054 815 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 AL583805.1-201ENST00000391389 531 ntBASIC12.98□□□□□ -0.33
FREM3P0C091 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 GGCT-203ENST00000409144 836 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 AL133466.1-201ENST00000447582 150 ntBASIC12.98□□□□□ -0.33
FREM3P0C091 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC12.98□□□□□ -0.33
FREM3P0C091 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC12.98□□□□□ -0.33
FREM3P0C091 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC12.98□□□□□ -0.33
FREM3P0C091 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 AL359881.3-201ENST00000602640 1721 ntBASIC12.98□□□□□ -0.33
FREM3P0C091 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FREM3P0C091 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 ST20-AS1-201ENST00000560255 4223 ntBASIC12.98□□□□□ -0.33
FREM3P0C091 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.98□□□□□ -0.33
FREM3P0C091 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
FREM3P0C091 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.97□□□□□ -0.33
FREM3P0C091 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
FREM3P0C091 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC12.97□□□□□ -0.33
FREM3P0C091 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC12.97□□□□□ -0.33
FREM3P0C091 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC12.97□□□□□ -0.33
FREM3P0C091 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
FREM3P0C091 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
FREM3P0C091 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.97□□□□□ -0.33
FREM3P0C091 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 AL627422.1-201ENST00000434104 580 ntBASIC12.97□□□□□ -0.33
FREM3P0C091 AC026320.2-201ENST00000434379 478 ntBASIC12.97□□□□□ -0.33
FREM3P0C091 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC12.97□□□□□ -0.33
FREM3P0C091 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC12.97□□□□□ -0.33
FREM3P0C091 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC12.97□□□□□ -0.33
FREM3P0C091 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC12.97□□□□□ -0.33
FREM3P0C091 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC12.97□□□□□ -0.33
FREM3P0C091 AC005618.3-201ENST00000624928 458 ntBASIC12.97□□□□□ -0.33
FREM3P0C091 AC006453.1-201ENST00000636037 1257 ntBASIC12.97□□□□□ -0.33
FREM3P0C091 AC244452.3-201ENST00000636814 210 ntBASIC12.97□□□□□ -0.33
FREM3P0C091 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
FREM3P0C091 USP39-220ENST00000613444 2161 ntTSL 2 BASIC12.97□□□□□ -0.33
FREM3P0C091 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 LAP3P2-201ENST00000454686 1454 ntBASIC12.97□□□□□ -0.33
FREM3P0C091 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
FREM3P0C091 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
FREM3P0C091 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms