Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
SDCBPO00560 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC12.27□□□□□ -0.45
SDCBPO00560 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
SDCBPO00560 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
SDCBPO00560 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 RPL28-207ENST00000558815 616 ntTSL 2 BASIC12.27□□□□□ -0.45
SDCBPO00560 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC12.27□□□□□ -0.45
SDCBPO00560 RN7SL48P-201ENST00000579283 293 ntBASIC12.27□□□□□ -0.45
SDCBPO00560 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC12.27□□□□□ -0.45
SDCBPO00560 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC12.27□□□□□ -0.45
SDCBPO00560 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC12.27□□□□□ -0.45
SDCBPO00560 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
SDCBPO00560 CLUHP2-201ENST00000426660 1303 ntBASIC12.27□□□□□ -0.45
SDCBPO00560 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC12.27□□□□□ -0.45
SDCBPO00560 AC020910.5-201ENST00000623668 1865 ntBASIC12.27□□□□□ -0.45
SDCBPO00560 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
SDCBPO00560 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
SDCBPO00560 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC12.27□□□□□ -0.45
SDCBPO00560 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
SDCBPO00560 NCLP1-201ENST00000445357 1963 ntBASIC12.27□□□□□ -0.45
SDCBPO00560 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
SDCBPO00560 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
SDCBPO00560 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC12.26□□□□□ -0.45
SDCBPO00560 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC12.26□□□□□ -0.45
SDCBPO00560 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
SDCBPO00560 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
SDCBPO00560 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
SDCBPO00560 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC12.26□□□□□ -0.45
SDCBPO00560 STRCP1-201ENST00000509801 5328 ntBASIC12.26□□□□□ -0.45
SDCBPO00560 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
SDCBPO00560 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
SDCBPO00560 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC12.26□□□□□ -0.45
SDCBPO00560 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 RN7SKP230-201ENST00000365642 335 ntBASIC12.26□□□□□ -0.45
SDCBPO00560 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC12.26□□□□□ -0.45
SDCBPO00560 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC12.26□□□□□ -0.45
SDCBPO00560 AC007389.4-201ENST00000454674 793 ntBASIC12.26□□□□□ -0.45
SDCBPO00560 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC12.26□□□□□ -0.45
SDCBPO00560 AC106760.1-201ENST00000508690 800 ntBASIC12.26□□□□□ -0.45
SDCBPO00560 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC12.26□□□□□ -0.45
SDCBPO00560 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC12.26□□□□□ -0.45
SDCBPO00560 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.26□□□□□ -0.45
SDCBPO00560 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC12.26□□□□□ -0.45
SDCBPO00560 AC025048.6-201ENST00000634326 1161 ntBASIC12.26□□□□□ -0.45
SDCBPO00560 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
SDCBPO00560 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC12.26□□□□□ -0.45
SDCBPO00560 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
SDCBPO00560 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
SDCBPO00560 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
SDCBPO00560 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC12.26□□□□□ -0.45
SDCBPO00560 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
SDCBPO00560 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.26□□□□□ -0.45
SDCBPO00560 PCDHB18P-202ENST00000526308 3197 ntBASIC12.26□□□□□ -0.45
SDCBPO00560 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC12.26□□□□□ -0.45
SDCBPO00560 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
SDCBPO00560 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 PCDHA6-201ENST00000378126 3267 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
SDCBPO00560 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
SDCBPO00560 FP325330.2-201ENST00000624219 5630 ntBASIC12.25□□□□□ -0.45
SDCBPO00560 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC12.25□□□□□ -0.45
SDCBPO00560 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms